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The map label for this gene is yedQ [H]

Identifier: 94311200

GI number: 94311200

Start: 2481918

End: 2482631

Strand: Direct

Name: yedQ [H]

Synonym: Rmet_2262

Alternate gene names: 94311200

Gene position: 2481918-2482631 (Clockwise)

Preceding gene: 94311199

Following gene: 94311201

Centisome position: 63.18

GC content: 67.23

Gene sequence:

>714_bases
ATGCCCGAGCCCGATCTGTTCGAATCGGAGAACAGCGTTCTGGCCCACGCCAGATCCGTGTTCTGCGATGTCGACGCGGG
CGAGGAAGCCTATCGTCACACCCTTGGCCAGCTCATCAGCTACTACGAGCGGCTGATGCGCGAGACGCGCCGCTTGATCC
GGCGCAGCGACCGTGAAGAGCTGGAAATGAACCGTCTCAACCACCGGTTGCAGGAACTGGCCCAGGAACTCGAATACCGC
GCCACGCACGACACACTGACCGGCGCGCTCAACCGCGGCGCCGTCATCGACCGCGCCACAGCGGCGCTGGCGCGCGGCAG
CCTCGCGCTGATCGTGATCGACATCGACCACTTCAAGCGCCTGAACGACGACTTCGGCCACCCCGTGGGCGATGCGGTGA
TCTGCGGCGTCACGGCCTGCCTGAAGGACACGGTCCGCATGGAAGGCGTGATCGGACGCATGGGCGGCGAAGAGTTCGCG
GCGCTGCTGCCCGACTTCACGATCGACGCCGCCGCCACGTTGGCCGACCAGATGCGCCAGGCCATCGCCGGACATCGTTT
CCCTGCCCCCGTCAACCGCGAGGTCACCGCCAGCTTCGGCGTAAGCTGGTCACCGCAGGGCCGCCCGTTCGAGCACGCCT
ACGGCCGCGCGGACGAGGCGTTGTATGAAGCCAAGCGAGGCGGGCGGAATCGGGTGACGCAGGCGCGGGAGTGA

Upstream 100 bases:

>100_bases
TCGAGTTCGGCCAGGAACTGCACGCCGATTTCCCCGCCATCGACTTCATCGATGAAGTGACGACCAGCAGTTGAATCCCC
CTCTCGCTACCGTCGCCGCC

Downstream 100 bases:

>100_bases
CTGGCATCGTCCAGCCAGTGCCCACTCGTCCGAGGGGTGAAGCAATCGCCGGCACAGCCCGATAGATGAGGTGTCTTGTG
CCGCATCCGTTATCCGTCAC

Product: putative signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MPEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREELEMNRLNHRLQELAQELEYR
ATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFA
ALLPDFTIDAAATLADQMRQAIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVTQARE

Sequences:

>Translated_237_residues
MPEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREELEMNRLNHRLQELAQELEYR
ATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFA
ALLPDFTIDAAATLADQMRQAIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVTQARE
>Mature_236_residues
PEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREELEMNRLNHRLQELAQELEYRA
THDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAA
LLPDFTIDAAATLADQMRQAIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVTQARE

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=35.7541899441341, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=35.632183908046, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=36.6459627329193, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=34.4827586206897, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=205, Percent_Identity=31.219512195122, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=29.1428571428571, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.9506172839506, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87081974, Length=176, Percent_Identity=28.9772727272727, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=31.0975609756098, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=30.5194805194805, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=169, Percent_Identity=32.5443786982249, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 26494; Mature: 26363

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREE
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LEMNRLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEHHHHHH
LNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH
AIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVTQARE
HHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PEPDLFESENSVLAHARSVFCDVDAGEEAYRHTLGQLISYYERLMRETRRLIRRSDREE
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LEMNRLNHRLQELAQELEYRATHDTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEHHHHHH
LNDDFGHPVGDAVICGVTACLKDTVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH
AIAGHRFPAPVNREVTASFGVSWSPQGRPFEHAYGRADEALYEAKRGGRNRVTQARE
HHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA