Click here to switch to the map view.

The map label for this gene is yfiB [H]

Identifier: 94311184

GI number: 94311184

Start: 2460246

End: 2460749

Strand: Direct

Name: yfiB [H]

Synonym: Rmet_2246

Alternate gene names: 94311184

Gene position: 2460246-2460749 (Clockwise)

Preceding gene: 94311183

Following gene: 94311185

Centisome position: 62.63

GC content: 67.66

Gene sequence:

>504_bases
ATGAGAGCGCCCAGCAGACCCCGCCGCGCTTTCCTGCTGACCACACTGGCCGGTCTGGGCGCGCTGGCGCTGTCCGGCTG
CGCCAGCCCCGCCCACAAGCTGACACCCGCGCAAATTGCCGTGCTCAAGAACCAGGGGTTCATGCTGACTGGCAACGGCT
GGGAACTTGTCATGCCGGACAAGGTGCTGTTCGGCTTCGACGACGACACGGTCTCGGCCGAGCAACAGAACGCCCTCGCC
CGGGTCGCGCGCACGCTGCGGGATGCCGGCATCGACGCCTTGCGCGTGGACGGCCACACCGACAACGTCGGCACGATCGA
GTACAACCAGCAACTCTCCATGCGCCGTGCCGAGGCTGTGGCGCGCGTGCTGCTCACCTGCGGTTTCGCACGCGATCATC
TCGATGTGCGCGGATTCGGCAAGACCCGCCCCATCGCCGACAACGGCACGGCGCTGGGGCGCGCGGAGAACCGCCGCGTG
GCGATCATTGTCACGGTCGAATAG

Upstream 100 bases:

>100_bases
TTCCGCCGATGCCGCGATGTACGGGGCCAAGCGCCAGTCCGGCGCCACCTGGCACAGCGCGGAGTCCGCGCCACCGGAGC
CACATCTCTAGAGGCCGACC

Downstream 100 bases:

>100_bases
ACCCTGTTCCGAAGAAACACTCTAATTCTGGCGTGCCGAGACAATCAGGCCGCAGCGAAAGCGCCTTTCTCGCCCTTTGC
CCATGTCCCCAGGCCCGCCC

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRAPSRPRRAFLLTTLAGLGALALSGCASPAHKLTPAQIAVLKNQGFMLTGNGWELVMPDKVLFGFDDDTVSAEQQNALA
RVARTLRDAGIDALRVDGHTDNVGTIEYNQQLSMRRAEAVARVLLTCGFARDHLDVRGFGKTRPIADNGTALGRAENRRV
AIIVTVE

Sequences:

>Translated_167_residues
MRAPSRPRRAFLLTTLAGLGALALSGCASPAHKLTPAQIAVLKNQGFMLTGNGWELVMPDKVLFGFDDDTVSAEQQNALA
RVARTLRDAGIDALRVDGHTDNVGTIEYNQQLSMRRAEAVARVLLTCGFARDHLDVRGFGKTRPIADNGTALGRAENRRV
AIIVTVE
>Mature_167_residues
MRAPSRPRRAFLLTTLAGLGALALSGCASPAHKLTPAQIAVLKNQGFMLTGNGWELVMPDKVLFGFDDDTVSAEQQNALA
RVARTLRDAGIDALRVDGHTDNVGTIEYNQQLSMRRAEAVARVLLTCGFARDHLDVRGFGKTRPIADNGTALGRAENRRV
AIIVTVE

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=147, Percent_Identity=42.1768707482993, Blast_Score=123, Evalue=6e-30,
Organism=Escherichia coli, GI48994946, Length=116, Percent_Identity=37.0689655172414, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18009; Mature: 18009

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPSRPRRAFLLTTLAGLGALALSGCASPAHKLTPAQIAVLKNQGFMLTGNGWELVMPD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEECCCEEEEECC
KVLFGFDDDTVSAEQQNALARVARTLRDAGIDALRVDGHTDNVGTIEYNQQLSMRRAEAV
EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHHH
ARVLLTCGFARDHLDVRGFGKTRPIADNGTALGRAENRRVAIIVTVE
HHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MRAPSRPRRAFLLTTLAGLGALALSGCASPAHKLTPAQIAVLKNQGFMLTGNGWELVMPD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEECCCEEEEECC
KVLFGFDDDTVSAEQQNALARVARTLRDAGIDALRVDGHTDNVGTIEYNQQLSMRRAEAV
EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHHH
ARVLLTCGFARDHLDVRGFGKTRPIADNGTALGRAENRRVAIIVTVE
HHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]