Click here to switch to the map view.

The map label for this gene is ycfH [C]

Identifier: 94311105

GI number: 94311105

Start: 2369937

End: 2370686

Strand: Direct

Name: ycfH [C]

Synonym: Rmet_2167

Alternate gene names: 94311105

Gene position: 2369937-2370686 (Clockwise)

Preceding gene: 94311104

Following gene: 94311106

Centisome position: 60.33

GC content: 58.53

Gene sequence:

>750_bases
ATGATGGATTTTCACTGTCATCTCGACCTGTATCCATCTGCTCGCACCGTTCACACCGAGGCCGCTCGTCGCTGTGAATT
TGTGTGGTTGGTCACCACCAGCCCGAGAGCCTTCATTGCCACATCGCGCATACTGCAGCCTGCCCCGACCATCATCATCT
CGCCTGGCCTTCATCCCGAGGTGGCACACCAGCGGCACAATGAGTTACCTCTGCTGCTTGAGGAGATTGGGCGCGCATCG
GCGGTCGGCGAAGTTGGCCTAGACGGCTCAGCGCGCTATCGCGAGCACTTCTCAGTCCAGAAAGCAATCTTCGAAGCAAC
AGTAGAGCGATGCAGTGAGTTGGGTGGCAGGGTCCTGAGTATTCATTCTCGCTCTGCCGCCAAAGAGGTTCTTGACACGC
TCGAGCGACACAGCGCACATGGCACAGCTGTTTTGCATTGGTTTAGCGACTCGCCGACACAACTGAGACGTGCTATTGAG
CTCGGCTGCTGGTTTAGCATAGGCCCTGCTATGTTGCGTAGTGCCAATGGGTTGCGTCTGGCTGCGTCGCTGCCTTCGGA
GCGCGTCGTACCGGAGAGCGATGGCCCCTTCGCAAAGCTGGACAGTCGGCCCATCATGCCGTGGCAGGCCATGGACATCG
TAGGGCCCTTGGCCAACGTCTGGGGCCTGACGGAGGACAAGGTGCGGGCACAGTTGACCGAAAATGGGCGAGAGCTACGC
CATATGATGACAGCAGAGAACTCGCAGTGA

Upstream 100 bases:

>100_bases
CCTTATCGTTTGCGACGCAAAATGAAAGGGTCCACTATCGAGATGTCGCGGAACGCGCACTGTTGGAGCTTTCGACATTG
CTGAAGCAGGACGGTGTTCT

Downstream 100 bases:

>100_bases
ATTGGCCGTGGGGACTAAGAACATGGCTGCAGCCGGCGTTCCGTTCCACACGCGAGGAGCGCTGAGAAGGCGGCGTCGAT
ATTGCCCTTCGCGCATCTTC

Product: TatD Mg-dependent-related deoxyribonuclease

Products: NA

Alternate protein names: TatD Family Hydrolase; Hydrolase TatD Family; Mg-Dependent DNAse; Mg-Dependent DNAse TatD; Deoxyribonuclease; Hydrolase; Metallo-Dependent Hydrolase; Metallodependent Hydrolase; TatD Related DNAse Family Protein; Deoxyribonuclease TatD Family; TatD Related DNAse; Tatd Deoxyribonuclease Family; Membrane Targeting/Translocation System Protein; Hydrolase With Metallo-Dependent Hydrolase Domain; Magnesium-Dependent DNAse; Hydrolase Of PHP Superfamily; Metal-Dependent Hydrolase YcfH

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMDFHCHLDLYPSARTVHTEAARRCEFVWLVTTSPRAFIATSRILQPAPTIIISPGLHPEVAHQRHNELPLLLEEIGRAS
AVGEVGLDGSARYREHFSVQKAIFEATVERCSELGGRVLSIHSRSAAKEVLDTLERHSAHGTAVLHWFSDSPTQLRRAIE
LGCWFSIGPAMLRSANGLRLAASLPSERVVPESDGPFAKLDSRPIMPWQAMDIVGPLANVWGLTEDKVRAQLTENGRELR
HMMTAENSQ

Sequences:

>Translated_249_residues
MMDFHCHLDLYPSARTVHTEAARRCEFVWLVTTSPRAFIATSRILQPAPTIIISPGLHPEVAHQRHNELPLLLEEIGRAS
AVGEVGLDGSARYREHFSVQKAIFEATVERCSELGGRVLSIHSRSAAKEVLDTLERHSAHGTAVLHWFSDSPTQLRRAIE
LGCWFSIGPAMLRSANGLRLAASLPSERVVPESDGPFAKLDSRPIMPWQAMDIVGPLANVWGLTEDKVRAQLTENGRELR
HMMTAENSQ
>Mature_249_residues
MMDFHCHLDLYPSARTVHTEAARRCEFVWLVTTSPRAFIATSRILQPAPTIIISPGLHPEVAHQRHNELPLLLEEIGRAS
AVGEVGLDGSARYREHFSVQKAIFEATVERCSELGGRVLSIHSRSAAKEVLDTLERHSAHGTAVLHWFSDSPTQLRRAIE
LGCWFSIGPAMLRSANGLRLAASLPSERVVPESDGPFAKLDSRPIMPWQAMDIVGPLANVWGLTEDKVRAQLTENGRELR
HMMTAENSQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110349730, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.21.-

Molecular weight: Translated: 27654; Mature: 27654

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDFHCHLDLYPSARTVHTEAARRCEFVWLVTTSPRAFIATSRILQPAPTIIISPGLHPE
CCCEEEEEEECCCCCHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCCCCCEEECCCCCHH
VAHQRHNELPLLLEEIGRASAVGEVGLDGSARYREHFSVQKAIFEATVERCSELGGRVLS
HHHHCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IHSRSAAKEVLDTLERHSAHGTAVLHWFSDSPTQLRRAIELGCWFSIGPAMLRSANGLRL
EHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
AASLPSERVVPESDGPFAKLDSRPIMPWQAMDIVGPLANVWGLTEDKVRAQLTENGRELR
EECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
HMMTAENSQ
HHHHCCCCC
>Mature Secondary Structure
MMDFHCHLDLYPSARTVHTEAARRCEFVWLVTTSPRAFIATSRILQPAPTIIISPGLHPE
CCCEEEEEEECCCCCHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCCCCCEEECCCCCHH
VAHQRHNELPLLLEEIGRASAVGEVGLDGSARYREHFSVQKAIFEATVERCSELGGRVLS
HHHHCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IHSRSAAKEVLDTLERHSAHGTAVLHWFSDSPTQLRRAIELGCWFSIGPAMLRSANGLRL
EHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
AASLPSERVVPESDGPFAKLDSRPIMPWQAMDIVGPLANVWGLTEDKVRAQLTENGRELR
EECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
HMMTAENSQ
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA