| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is adhB [H]
Identifier: 94311093
GI number: 94311093
Start: 2354267
End: 2356453
Strand: Direct
Name: adhB [H]
Synonym: Rmet_2155
Alternate gene names: 94311093
Gene position: 2354267-2356453 (Clockwise)
Preceding gene: 335055581
Following gene: 94311094
Centisome position: 59.93
GC content: 62.87
Gene sequence:
>2187_bases ATGAGAATTCCCGCGATCACCATTCGAAAGGCCCTGCAAGGCGGATTGGCCTTGCTGACGGCCATCGGGGCGACATATGC CCTGGCACAAACCGAGCCCGCACCTTCGCCAAATGCGACCCATCCCCAGGTCATCGACGACTTGCCGGCGAACTACGCTG CCAGCCTGGATGCAGCGACTCGGAAGCAAGTCGAACGGGGCCGATACGTAGCGCGGCTAGGCGATTGTGTCGCCTGTCAC ACCGGCACCGACAAGTCCAGACCGATGGCAGGCGGGCTTGCGCTGGAGACGCCATTCGGCACGCTGCATTCGACCAACAT CACACCCGACCCCGAAACCGGGATCGGGCGATACAGCTTCGCGCAGTTCGACCGTGCGATGCGCAAGGGCGTGGCCGCCG ACGGCCACAACCTGTATCCGGCCATGCCGTATCCCTCCTATGCCAAGCTCACGCAGGAGGACATGCAGGCGCTGTACGCA TACCTGATGCACGGCGTGAAGCCAGTCCGCCAAGCCAATCAGCCGTTGGGGATGTCATTCCCCTTCAACCAGCGCTGGGG ATTGGCAGTCTGGAATTGGCTGTTCCTGGACGCAAAGCCCTTCCAGCCCAATGCAAAGCAGGACGCGGAATGGAACCGCG GCGCCTATATCGTGCAAGGGCTCGGACACTGCGGCGCATGCCATACGCCTCGCGGCATTGGCTTCCAGGAGAAGACCATG TCCGATGCTGGCAGCACGGGCAAATTTTTCCTCGCGGGAGAGACCGTGGAGGGATGGCGCGCACTGAGCCTGCGCAGCCT GTGGACGCCTGAGGACACCGCCGAGATTCTGAAGACCGGGCGCAACCAGCATGGCACGGTGTCCGGAAACATGGTCGACG TGGTGCAGCACAGTACCCAGTACATGACGGATGGCGATCTGAAAGCCATCGGCGTCTATCTCAAGTCGCTACCGGCTGCG GGGCATGACAAGCCGATGCAGGTCGCACAGGGGCCCGCGCCCTCCATCGCGCCGCGCGCGTCAAAGGCCGAATCGGACGT TGTACCGGCCACCGCATCTGGAGCGCCCGCCGACCTCTATACCTCGCGCGGTGGATTGGGATACCTGCAGTTCTGCACCG ACTGCCATCGCTCGGATGGTGCCGGGGTATCAGGCGTGTTCCCGGCGCTTGCGGGCAACCCGGTACTGATGTCCGACGAC CCCTCGACGCTCGTTCATATCACGCTGACGGGCTGGCGTTCCGCCCAGACTGCCGACAATGCCCGCGTCCTGAGCATGCC GGCATTCGCCCGCCTGAGCGACCAGGAAATTGCCGAGATCCTGAACTTCACCCGCAGAAGCTGGGGCAACGCCACAGCCA AGCCGATCGCGGCAGCCACGGTGCGGAGCATGCGCAAGCAACTCGACGTCCGTAAGCTTGACGACAGCAAGTTCGAGACC CCGCGCATCGCCAACATCTTGAAGGAGTCCAACGCCACACAGCTGGTTCTTGGTGCCCGGCTGAACATCAACACGCACGA GATGCTGCCCAGGAATGTGGGCAATGCGCTGAACTGCGCGAGTTGCCACCTGAATGCCGGGACCGTCGCGGATGGCTCGC CGTATGTTGGTGTGTCCGCGTTCTTCCCGAGCTACGCGCCGCGGGCCGGCCGGGTCATCACGCTGGCAGACCGTATCAAC GGTTGCTTCCTGCGATCGATGAACGGCAAGCCGCTGCCGCTCGACTCCGAGGAACTCAAGGCGATGGTCGCTTACTTCGA CTGGATGAAACGCGAGACCAAGCCAGAGGACAAGGTCGAAGGCCGCGGTGTCGGCAAGATCGACCGCCGCCTGGTACCGA ACGTGGAAAACGGCAAGAAAATCTACGCAGTCCAGTGCGCGCTATGCCACGGTGACGGCGGCGAAGGCATCAAGAATGCC AACGGCAAGTGGGTCTATCCGCCGCTGTGGGGCGACGAGTCCTTCAACATCGGTGCGGGTATGGCGCGAACCTATACGGC AGCGGCCTTCGTCAAGCGCAACATGCCCATCGCTTTCCATAACGGGTTCCCCTTGGGCCAGGGCGGGTTGACCGATCAGG AAGCAGTGGATGTCGCCGAGTACTTCACCCACATGCCCCGGCCAGACTTCGCGGCCAAGGTCAAGGATTGGCCCAACGAC AAGAAGCCGGCCGACGCACGTTACTAA
Upstream 100 bases:
>100_bases GCGGGGTGTTGGCGCGACCATGCACTGACAAAACCCTTTGGACATCAAGGGCATAAAACACGCGGAACCTCATGGGGTTC CGTTCCTACCGCACACAATA
Downstream 100 bases:
>100_bases CGCTTCTTGGCTGGCGCGGCCCCGACGTCAAAACGTTGGGGCCGCCGACGCCAAATGTCGGATGTCGGAAACACACGCTA CCTGGAGGGATAGGACGTCG
Product: cytochrome c family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 728; Mature: 728
Protein sequence:
>728_residues MRIPAITIRKALQGGLALLTAIGATYALAQTEPAPSPNATHPQVIDDLPANYAASLDAATRKQVERGRYVARLGDCVACH TGTDKSRPMAGGLALETPFGTLHSTNITPDPETGIGRYSFAQFDRAMRKGVAADGHNLYPAMPYPSYAKLTQEDMQALYA YLMHGVKPVRQANQPLGMSFPFNQRWGLAVWNWLFLDAKPFQPNAKQDAEWNRGAYIVQGLGHCGACHTPRGIGFQEKTM SDAGSTGKFFLAGETVEGWRALSLRSLWTPEDTAEILKTGRNQHGTVSGNMVDVVQHSTQYMTDGDLKAIGVYLKSLPAA GHDKPMQVAQGPAPSIAPRASKAESDVVPATASGAPADLYTSRGGLGYLQFCTDCHRSDGAGVSGVFPALAGNPVLMSDD PSTLVHITLTGWRSAQTADNARVLSMPAFARLSDQEIAEILNFTRRSWGNATAKPIAAATVRSMRKQLDVRKLDDSKFET PRIANILKESNATQLVLGARLNINTHEMLPRNVGNALNCASCHLNAGTVADGSPYVGVSAFFPSYAPRAGRVITLADRIN GCFLRSMNGKPLPLDSEELKAMVAYFDWMKRETKPEDKVEGRGVGKIDRRLVPNVENGKKIYAVQCALCHGDGGEGIKNA NGKWVYPPLWGDESFNIGAGMARTYTAAAFVKRNMPIAFHNGFPLGQGGLTDQEAVDVAEYFTHMPRPDFAAKVKDWPND KKPADARY
Sequences:
>Translated_728_residues MRIPAITIRKALQGGLALLTAIGATYALAQTEPAPSPNATHPQVIDDLPANYAASLDAATRKQVERGRYVARLGDCVACH TGTDKSRPMAGGLALETPFGTLHSTNITPDPETGIGRYSFAQFDRAMRKGVAADGHNLYPAMPYPSYAKLTQEDMQALYA YLMHGVKPVRQANQPLGMSFPFNQRWGLAVWNWLFLDAKPFQPNAKQDAEWNRGAYIVQGLGHCGACHTPRGIGFQEKTM SDAGSTGKFFLAGETVEGWRALSLRSLWTPEDTAEILKTGRNQHGTVSGNMVDVVQHSTQYMTDGDLKAIGVYLKSLPAA GHDKPMQVAQGPAPSIAPRASKAESDVVPATASGAPADLYTSRGGLGYLQFCTDCHRSDGAGVSGVFPALAGNPVLMSDD PSTLVHITLTGWRSAQTADNARVLSMPAFARLSDQEIAEILNFTRRSWGNATAKPIAAATVRSMRKQLDVRKLDDSKFET PRIANILKESNATQLVLGARLNINTHEMLPRNVGNALNCASCHLNAGTVADGSPYVGVSAFFPSYAPRAGRVITLADRIN GCFLRSMNGKPLPLDSEELKAMVAYFDWMKRETKPEDKVEGRGVGKIDRRLVPNVENGKKIYAVQCALCHGDGGEGIKNA NGKWVYPPLWGDESFNIGAGMARTYTAAAFVKRNMPIAFHNGFPLGQGGLTDQEAVDVAEYFTHMPRPDFAAKVKDWPND KKPADARY >Mature_728_residues MRIPAITIRKALQGGLALLTAIGATYALAQTEPAPSPNATHPQVIDDLPANYAASLDAATRKQVERGRYVARLGDCVACH TGTDKSRPMAGGLALETPFGTLHSTNITPDPETGIGRYSFAQFDRAMRKGVAADGHNLYPAMPYPSYAKLTQEDMQALYA YLMHGVKPVRQANQPLGMSFPFNQRWGLAVWNWLFLDAKPFQPNAKQDAEWNRGAYIVQGLGHCGACHTPRGIGFQEKTM SDAGSTGKFFLAGETVEGWRALSLRSLWTPEDTAEILKTGRNQHGTVSGNMVDVVQHSTQYMTDGDLKAIGVYLKSLPAA GHDKPMQVAQGPAPSIAPRASKAESDVVPATASGAPADLYTSRGGLGYLQFCTDCHRSDGAGVSGVFPALAGNPVLMSDD PSTLVHITLTGWRSAQTADNARVLSMPAFARLSDQEIAEILNFTRRSWGNATAKPIAAATVRSMRKQLDVRKLDDSKFET PRIANILKESNATQLVLGARLNINTHEMLPRNVGNALNCASCHLNAGTVADGSPYVGVSAFFPSYAPRAGRVITLADRIN GCFLRSMNGKPLPLDSEELKAMVAYFDWMKRETKPEDKVEGRGVGKIDRRLVPNVENGKKIYAVQCALCHGDGGEGIKNA NGKWVYPPLWGDESFNIGAGMARTYTAAAFVKRNMPIAFHNGFPLGQGGLTDQEAVDVAEYFTHMPRPDFAAKVKDWPND KKPADARY
Specific function: Dehydration of primary alcohols (exception:methanol) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 cytochrome c domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR014353 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: NA
Molecular weight: Translated: 78766; Mature: 78766
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: PS51007 CYTC ; PS51008 MULTIHEME_CYTC L=rr
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIPAITIRKALQGGLALLTAIGATYALAQTEPAPSPNATHPQVIDDLPANYAASLDAAT CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH RKQVERGRYVARLGDCVACHTGTDKSRPMAGGLALETPFGTLHSTNITPDPETGIGRYSF HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHH AQFDRAMRKGVAADGHNLYPAMPYPSYAKLTQEDMQALYAYLMHGVKPVRQANQPLGMSF HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC PFNQRWGLAVWNWLFLDAKPFQPNAKQDAEWNRGAYIVQGLGHCGACHTPRGIGFQEKTM CCCCCCCHHEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH SDAGSTGKFFLAGETVEGWRALSLRSLWTPEDTAEILKTGRNQHGTVSGNMVDVVQHSTQ HCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH YMTDGDLKAIGVYLKSLPAAGHDKPMQVAQGPAPSIAPRASKAESDVVPATASGAPADLY HCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TSRGGLGYLQFCTDCHRSDGAGVSGVFPALAGNPVLMSDDPSTLVHITLTGWRSAQTADN HCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCC ARVLSMPAFARLSDQEIAEILNFTRRSWGNATAKPIAAATVRSMRKQLDVRKLDDSKFET CEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCC PRIANILKESNATQLVLGARLNINTHEMLPRNVGNALNCASCHLNAGTVADGSPYVGVSA HHHHHHHHCCCCCEEEEEEEECCCHHHHCHHHCCCCCCHHEEECCCCCCCCCCCCCCHHH FFPSYAPRAGRVITLADRINGCFLRSMNGKPLPLDSEELKAMVAYFDWMKRETKPEDKVE HCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHC GRGVGKIDRRLVPNVENGKKIYAVQCALCHGDGGEGIKNANGKWVYPPLWGDESFNIGAG CCCCCHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCC MARTYTAAAFVKRNMPIAFHNGFPLGQGGLTDQEAVDVAEYFTHMPRPDFAAKVKDWPND HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCC KKPADARY CCCCCCCC >Mature Secondary Structure MRIPAITIRKALQGGLALLTAIGATYALAQTEPAPSPNATHPQVIDDLPANYAASLDAAT CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHCCCCHHHHHHHHH RKQVERGRYVARLGDCVACHTGTDKSRPMAGGLALETPFGTLHSTNITPDPETGIGRYSF HHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHH AQFDRAMRKGVAADGHNLYPAMPYPSYAKLTQEDMQALYAYLMHGVKPVRQANQPLGMSF HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC PFNQRWGLAVWNWLFLDAKPFQPNAKQDAEWNRGAYIVQGLGHCGACHTPRGIGFQEKTM CCCCCCCHHEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH SDAGSTGKFFLAGETVEGWRALSLRSLWTPEDTAEILKTGRNQHGTVSGNMVDVVQHSTQ HCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEEHHHHHHHH YMTDGDLKAIGVYLKSLPAAGHDKPMQVAQGPAPSIAPRASKAESDVVPATASGAPADLY HCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH TSRGGLGYLQFCTDCHRSDGAGVSGVFPALAGNPVLMSDDPSTLVHITLTGWRSAQTADN HCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEECCCCCEEEEEEEECCCCCCCCCC ARVLSMPAFARLSDQEIAEILNFTRRSWGNATAKPIAAATVRSMRKQLDVRKLDDSKFET CEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCC PRIANILKESNATQLVLGARLNINTHEMLPRNVGNALNCASCHLNAGTVADGSPYVGVSA HHHHHHHHCCCCCEEEEEEEECCCHHHHCHHHCCCCCCHHEEECCCCCCCCCCCCCCHHH FFPSYAPRAGRVITLADRINGCFLRSMNGKPLPLDSEELKAMVAYFDWMKRETKPEDKVE HCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHC GRGVGKIDRRLVPNVENGKKIYAVQCALCHGDGGEGIKNANGKWVYPPLWGDESFNIGAG CCCCCHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCC MARTYTAAAFVKRNMPIAFHNGFPLGQGGLTDQEAVDVAEYFTHMPRPDFAAKVKDWPND HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCC KKPADARY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA