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The map label for this gene is sdsB [H]

Identifier: 94311086

GI number: 94311086

Start: 2341039

End: 2341992

Strand: Reverse

Name: sdsB [H]

Synonym: Rmet_2148

Alternate gene names: 94311086

Gene position: 2341992-2341039 (Counterclockwise)

Preceding gene: 335055582

Following gene: 94311084

Centisome position: 59.62

GC content: 67.19

Gene sequence:

>954_bases
ATGCGGTGCGGACCTATAATTCAAGTGCAAATTTCGTATCGCAGCAATGCAATCTACGCATATATGAATCTCAAACGGCT
TGAACATCTGGTCGCGGTGGCGGAGGAGGGCTCCCTGGCAGCGGCGGCGCGGCGGGTCCATCTGAGTCAGCCGGCGTTGA
CGCGAAGCATCCAGACACTGGAAGAGGAAGCCGGCGCGGTGCTGTTCGATCGCGGCACACGCGGCGTGACGCTGACCGCT
GTCGGGCGCATGGTCACCGAGCGCGCCCGGCGCATCCTGTTCGAGACGCACTGCCTGACCCGCGACCTGACGCTGGTGCG
GCAGCACGAGATCGGCAGCGTCCAGATCGGACTCGGCGCCTTTCCGGCAGCGATGCTGCTGCCGGAGGTGCTTTGCCTGC
TGCACCGGGAGTGGCCCGGGCTGCAGATTGCGACCGAGGTTAGTGATCCTCGCGCGCTGCTTGACGCGTTGCGCGCCGAG
CGGTTGGATTTCGTCGTGATCGAGCAGAGCACAGTGCCGACCCTGGCCGAGCTGGAAGTGCAGCGGCTGCCGGAGGAGTC
GGCTGGCCTGTTCGTGCGGCAGGGGCATCCGCTGGCGAGGCGGCCCGTGTTGCTGCCGGCGCTAAGGGAGGCAGCGCTGG
TATCGGTGGTGTTCCCGCCCGAAACGCACGAGCGGCTGCGCAAGGTGTTGCGCTGCAAGCCGGGGGAGGCACTGCCGTTT
CAGGTGGAAAGCAACGATTTCCGGGCCTTGACCTATCTCGCCAAACATACCGATGCGGTGTTGCTGGCGCCAGCGCGTGC
CGTCCGCGATGAGACGGCGGCGGGGAGTCTGGTGCCGCTCGACGTTCCGGGTCTGCCCGCCATGACGATGCAGTTCGCGG
TCGTGCGGCTTGCGCAGCGGACGCTCTCGCCGGCCGCCGGGCGGGCCGTGGCGGCGATCGAGGCGGTGGCCTGA

Upstream 100 bases:

>100_bases
AGTGCGACGGACATCGTCAGCGCGGCGGAAGCAAGGGCGGTCAAGCGGGCAATGCGCATGGGTAGGCTCTACAGGGCTGA
GTCGGGAAAAGAGTCATTGG

Downstream 100 bases:

>100_bases
AGAAACAAAAAGGCGCCCCGTGTTGGGGCGCCTGGATCGCAGGGGCGGTGCGAAGCCGGGATCAGTCCTCGACGGCCGTG
CCCACGATGTTGTAGCCGCC

Product: transcriptional regulator, LysR-family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTLEEEAGAVLFDRGTRGVTLTA
VGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGAFPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAE
RLDFVVIEQSTVPTLAELEVQRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPF
QVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQRTLSPAAGRAVAAIEAVA

Sequences:

>Translated_317_residues
MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTLEEEAGAVLFDRGTRGVTLTA
VGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGAFPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAE
RLDFVVIEQSTVPTLAELEVQRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPF
QVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQRTLSPAAGRAVAAIEAVA
>Mature_317_residues
MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTLEEEAGAVLFDRGTRGVTLTA
VGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGAFPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAE
RLDFVVIEQSTVPTLAELEVQRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPF
QVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQRTLSPAAGRAVAAIEAVA

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=32.3863636363636, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081904, Length=277, Percent_Identity=31.4079422382672, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790399, Length=180, Percent_Identity=32.7777777777778, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=182, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=30.5785123966942, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=154, Percent_Identity=32.4675324675325, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789639, Length=136, Percent_Identity=30.8823529411765, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788297, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=165, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=183, Percent_Identity=26.775956284153, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=151, Percent_Identity=29.1390728476821, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=25.085910652921, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34677; Mature: 34677

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTL
CCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
EEEAGAVLFDRGTRGVTLTAVGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGA
HHHCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
FPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAERLDFVVIEQSTVPTLAELEV
CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
QRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPF
HHCCCCCCCEEEECCCCCHHCCCHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCEE
QVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQR
EECCCCCHHHHHHHHCCCEEEECCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
TLSPAAGRAVAAIEAVA
HCCCCCCCHHHHHEECC
>Mature Secondary Structure
MRCGPIIQVQISYRSNAIYAYMNLKRLEHLVAVAEEGSLAAAARRVHLSQPALTRSIQTL
CCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
EEEAGAVLFDRGTRGVTLTAVGRMVTERARRILFETHCLTRDLTLVRQHEIGSVQIGLGA
HHHCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
FPAAMLLPEVLCLLHREWPGLQIATEVSDPRALLDALRAERLDFVVIEQSTVPTLAELEV
CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
QRLPEESAGLFVRQGHPLARRPVLLPALREAALVSVVFPPETHERLRKVLRCKPGEALPF
HHCCCCCCCEEEECCCCCHHCCCHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCEE
QVESNDFRALTYLAKHTDAVLLAPARAVRDETAAGSLVPLDVPGLPAMTMQFAVVRLAQR
EECCCCCHHHHHHHHCCCEEEECCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH
TLSPAAGRAVAAIEAVA
HCCCCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]