Click here to switch to the map view.

The map label for this gene is ybjL [C]

Identifier: 94310923

GI number: 94310923

Start: 2158538

End: 2160223

Strand: Direct

Name: ybjL [C]

Synonym: Rmet_1985

Alternate gene names: 94310923

Gene position: 2158538-2160223 (Clockwise)

Preceding gene: 94310922

Following gene: 335055568

Centisome position: 54.95

GC content: 58.13

Gene sequence:

>1686_bases
ATGACCTGGTTTGTCTCCACCCTCAAGGCGTACCCCGAGATCGCGATTTTTCTCGCACTGGGAATCGGCTACTGGGTAGG
CGGGAAGAGCTACAAGGGGTTCAGCCTGGGCGCCGTAACGTCGACACTGCTGGTGGCGATCGTCATCGGCATCCTCGGCG
TGAAGATCTCCGCGAACGTGAAATCCGTCTTTTTCCTGATGTTTCTGTTTGCGGTGGGCTATGGCGTCGGCCCGCAGTTC
GTTCGCGGCATTGCGAAGGATGGCATCCCTCAAGCCATATTTGCTGCGATAGTCTCGGTGCTGTGTCTCGCCGCACCCAT
CGTTGCGGCGATGGTCGCCGGCTACGATCTCGGGTCGGCTGCCGGATTATTTGCGGGTTCGCAGACAATCTCGGCGTCCA
TGGGCCTCGCCACTGATGCCATCAATCGCCTGGGCCGATCTCCGGAAGAAACCAAACAGCTTCTGGACGGCATGCCGATC
GCCTATGCGGTCACGTATATCTTCGGTACGGTCGGCTCGGCAATTATCCTGGCGCAAATTGGCCCCAAACTGCTTGGCAT
CGACCTTGTAGCTGCCTGCAAGGATTATGAGCAGCAACTTGGAGCCGGAGCAGACGGAGAAGGCACCGAATGGCATGAGT
TTGAACTGCGAGCCTACGCGCTGGCCCCCCACAGCCCATACATCGGCAAGTCCGTAGCCGAACTGGAGGCCAGCACGGCC
GAAGGCGTACGTGCCTTTATCGAACGCATTCGCCGAGGTGGCAAGATTATCGAGGCACAACTCGATACCGTTCTGGAGCC
TGGCGATATCGTCGCAATAGGCGGAAAGCGCGATCAACTGATTGCCAGACTGGGACCAAGCGGCCGTGAAGTGGAAGACT
CAGAGCTGCTCAATGTGCAGACGGAGGGTGTGGACATCTATATCACCAACAAGGAGGTTGATGGCCACACACTGCAGGAG
ATGGCTCGGTGGCCCGGTGCGCGTGGGATTTTCCTGAAGAAGATCAAGCGCGGACCGACGGAAACGGTCATCCCCGTACT
GCCGAAAACCAAGCTCTACCGCGGTGACGTCATCACGGTGGTCGGCCGCACGCAGGACATCAATGCGACAGCGAAACATG
TCGGGTATATCGACCGCCCGACAACGGTGACCGACGTGGCATTCGTGTCGCTGGCGATTACCGTCGGCGCATTGATCGGT
GCCGTCGTGATCAACGTCAGCGGCATTCCCCTGACGATTTCCACGGCAGGCGGCGCGCTAATCGCAGGTATTATCTTCGG
TTGGTACCGGGCCATTCACCCGACTTTCGGACGCATACCTGAGCCAACTCTTTGGTTCATGAATTCGGTTGGCCTCAATG
TGTTCATTGCGGTCGTCGGTATTTCCGCGGGCCCTGGCTTTATTGCCGGCCTGCAGAAACTCGGCGTCAGCCTCTTCCTC
TGGGGTATTTTCGCCACATCGATACCGCTAATCATCGGCATGTACCTGGCCAAGTACGTATTTCGCTTTCATCCGGCGCT
CGTACTTGGAGTCTGTGCCGGCGCGCGCACAACCACTGCTGCGCTCGGCATGATCTGCGAGACCGCGAAAAGCCAAGTGC
CAGGCCTTGGCTATACCGTGACCTACGCTGTGGGTAACACCCTGCTGACAATCTGGGGGATGGTCGTCATCATGATTCTT
TCATGA

Upstream 100 bases:

>100_bases
TACCAGGAGTCCGGCGGCAAGACACAGAAGCCGAAAAAGAAGTAACCCGGTCGCGGCAAGGCAGTTCTGACTAATCAGTC
TACAAATACAGGAGTAGGCT

Downstream 100 bases:

>100_bases
GCGTTTGCGCCGCTCAGCTGCACTTGGGTGGCGCAATCCGGCTTCAAGGGATTGAAGCGATCAAATCGACCGACTGGTTA
TCCAAGCCCGGTCTTGGCTG

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MTWFVSTLKAYPEIAIFLALGIGYWVGGKSYKGFSLGAVTSTLLVAIVIGILGVKISANVKSVFFLMFLFAVGYGVGPQF
VRGIAKDGIPQAIFAAIVSVLCLAAPIVAAMVAGYDLGSAAGLFAGSQTISASMGLATDAINRLGRSPEETKQLLDGMPI
AYAVTYIFGTVGSAIILAQIGPKLLGIDLVAACKDYEQQLGAGADGEGTEWHEFELRAYALAPHSPYIGKSVAELEASTA
EGVRAFIERIRRGGKIIEAQLDTVLEPGDIVAIGGKRDQLIARLGPSGREVEDSELLNVQTEGVDIYITNKEVDGHTLQE
MARWPGARGIFLKKIKRGPTETVIPVLPKTKLYRGDVITVVGRTQDINATAKHVGYIDRPTTVTDVAFVSLAITVGALIG
AVVINVSGIPLTISTAGGALIAGIIFGWYRAIHPTFGRIPEPTLWFMNSVGLNVFIAVVGISAGPGFIAGLQKLGVSLFL
WGIFATSIPLIIGMYLAKYVFRFHPALVLGVCAGARTTTAALGMICETAKSQVPGLGYTVTYAVGNTLLTIWGMVVIMIL
S

Sequences:

>Translated_561_residues
MTWFVSTLKAYPEIAIFLALGIGYWVGGKSYKGFSLGAVTSTLLVAIVIGILGVKISANVKSVFFLMFLFAVGYGVGPQF
VRGIAKDGIPQAIFAAIVSVLCLAAPIVAAMVAGYDLGSAAGLFAGSQTISASMGLATDAINRLGRSPEETKQLLDGMPI
AYAVTYIFGTVGSAIILAQIGPKLLGIDLVAACKDYEQQLGAGADGEGTEWHEFELRAYALAPHSPYIGKSVAELEASTA
EGVRAFIERIRRGGKIIEAQLDTVLEPGDIVAIGGKRDQLIARLGPSGREVEDSELLNVQTEGVDIYITNKEVDGHTLQE
MARWPGARGIFLKKIKRGPTETVIPVLPKTKLYRGDVITVVGRTQDINATAKHVGYIDRPTTVTDVAFVSLAITVGALIG
AVVINVSGIPLTISTAGGALIAGIIFGWYRAIHPTFGRIPEPTLWFMNSVGLNVFIAVVGISAGPGFIAGLQKLGVSLFL
WGIFATSIPLIIGMYLAKYVFRFHPALVLGVCAGARTTTAALGMICETAKSQVPGLGYTVTYAVGNTLLTIWGMVVIMIL
S
>Mature_560_residues
TWFVSTLKAYPEIAIFLALGIGYWVGGKSYKGFSLGAVTSTLLVAIVIGILGVKISANVKSVFFLMFLFAVGYGVGPQFV
RGIAKDGIPQAIFAAIVSVLCLAAPIVAAMVAGYDLGSAAGLFAGSQTISASMGLATDAINRLGRSPEETKQLLDGMPIA
YAVTYIFGTVGSAIILAQIGPKLLGIDLVAACKDYEQQLGAGADGEGTEWHEFELRAYALAPHSPYIGKSVAELEASTAE
GVRAFIERIRRGGKIIEAQLDTVLEPGDIVAIGGKRDQLIARLGPSGREVEDSELLNVQTEGVDIYITNKEVDGHTLQEM
ARWPGARGIFLKKIKRGPTETVIPVLPKTKLYRGDVITVVGRTQDINATAKHVGYIDRPTTVTDVAFVSLAITVGALIGA
VVINVSGIPLTISTAGGALIAGIIFGWYRAIHPTFGRIPEPTLWFMNSVGLNVFIAVVGISAGPGFIAGLQKLGVSLFLW
GIFATSIPLIIGMYLAKYVFRFHPALVLGVCAGARTTTAALGMICETAKSQVPGLGYTVTYAVGNTLLTIWGMVVIMILS

Specific function: Unknown

COG id: COG2985

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1787071, Length=549, Percent_Identity=31.6939890710383, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87082315, Length=482, Percent_Identity=23.0290456431535, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022457
- InterPro:   IPR006037
- InterPro:   IPR006512 [H]

Pfam domain/function: PF06826 Asp-Al_Ex; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 59171; Mature: 59040

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWFVSTLKAYPEIAIFLALGIGYWVGGKSYKGFSLGAVTSTLLVAIVIGILGVKISANV
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCH
KSVFFLMFLFAVGYGVGPQFVRGIAKDGIPQAIFAAIVSVLCLAAPIVAAMVAGYDLGSA
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGLFAGSQTISASMGLATDAINRLGRSPEETKQLLDGMPIAYAVTYIFGTVGSAIILAQI
HHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GPKLLGIDLVAACKDYEQQLGAGADGEGTEWHEFELRAYALAPHSPYIGKSVAELEASTA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHH
EGVRAFIERIRRGGKIIEAQLDTVLEPGDIVAIGGKRDQLIARLGPSGREVEDSELLNVQ
HHHHHHHHHHHCCCCEEEEHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCCCCHHEEEE
TEGVDIYITNKEVDGHTLQEMARWPGARGIFLKKIKRGPTETVIPVLPKTKLYRGDVITV
ECCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCCEEECCCEEEE
VGRTQDINATAKHVGYIDRPTTVTDVAFVSLAITVGALIGAVVINVSGIPLTISTAGGAL
EECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
IAGIIFGWYRAIHPTFGRIPEPTLWFMNSVGLNVFIAVVGISAGPGFIAGLQKLGVSLFL
HHHHHHHHHHHHCCHHCCCCCCHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHHHHHHH
WGIFATSIPLIIGMYLAKYVFRFHPALVLGVCAGARTTTAALGMICETAKSQVPGLGYTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEE
TYAVGNTLLTIWGMVVIMILS
EEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TWFVSTLKAYPEIAIFLALGIGYWVGGKSYKGFSLGAVTSTLLVAIVIGILGVKISANV
CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCH
KSVFFLMFLFAVGYGVGPQFVRGIAKDGIPQAIFAAIVSVLCLAAPIVAAMVAGYDLGSA
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGLFAGSQTISASMGLATDAINRLGRSPEETKQLLDGMPIAYAVTYIFGTVGSAIILAQI
HHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GPKLLGIDLVAACKDYEQQLGAGADGEGTEWHEFELRAYALAPHSPYIGKSVAELEASTA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHH
EGVRAFIERIRRGGKIIEAQLDTVLEPGDIVAIGGKRDQLIARLGPSGREVEDSELLNVQ
HHHHHHHHHHHCCCCEEEEHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCCCCHHEEEE
TEGVDIYITNKEVDGHTLQEMARWPGARGIFLKKIKRGPTETVIPVLPKTKLYRGDVITV
ECCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCCEEECCCEEEE
VGRTQDINATAKHVGYIDRPTTVTDVAFVSLAITVGALIGAVVINVSGIPLTISTAGGAL
EECCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
IAGIIFGWYRAIHPTFGRIPEPTLWFMNSVGLNVFIAVVGISAGPGFIAGLQKLGVSLFL
HHHHHHHHHHHHCCHHCCCCCCHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHHHHHHH
WGIFATSIPLIIGMYLAKYVFRFHPALVLGVCAGARTTTAALGMICETAKSQVPGLGYTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEE
TYAVGNTLLTIWGMVVIMILS
EEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]