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The map label for this gene is ydhO [H]

Identifier: 94310910

GI number: 94310910

Start: 2148462

End: 2149100

Strand: Direct

Name: ydhO [H]

Synonym: Rmet_1972

Alternate gene names: 94310910

Gene position: 2148462-2149100 (Clockwise)

Preceding gene: 94310909

Following gene: 94310919

Centisome position: 54.69

GC content: 66.82

Gene sequence:

>639_bases
ATGCCGCAGCGCCCGTTTCACTCACCCTCTCGCCGGCTTTCACTATCCGCACTGTGCGCAGCGGCACTACTGCTCGCCGC
CTGCGCCGGCGGGCCGCCCGCACGTCAGGGCGCGTCGCTGCCCCGCACACCGGGCAAGCCAATCGTCGATCCCAGCGCCG
GACTCGAGGAAGTCTCGATCCAGGCAATGTCCCTCGTCGGCACACCATACCGCTACGGCGGAAACACGCCTGACTCCGGA
TTCGATTGCAGCGGCCTGGTCCGTTACGTGGTCCAGCGCGCCGCCAGCGTCAACCTGCCACGCACCACCGAGCAAATGGG
ACAGCGTGGCACGGCACTCGATCGGCGCGATGTCGCATCGGGCGATCTTGTCTTTTTCAACACCACGGGACGCGCCAACT
CCCATGTCGGCATCTATGTCGGACAGAATCGCTTTGTCCACGCCCCAGCCACCGGTGGCACCGTCCGGCTGGAAGACATG
ACCAAGTCGTACTGGGCGTCGCGCTACAACGGCGCGCGGCGCGTCGTGGCCGCCGGCAGCCTCGATATGACCCCGGTTCC
CAGCCCAGTTCCGTCAGCCCCAATCACCCCACCCGCCCCGGACGACGACGATCCGATCGCCGCATTCGCGAACCGGTAA

Upstream 100 bases:

>100_bases
AAAGTCCATCAAGATCACCACCGGCACGCGTAACGCGCAAATGCGCTGGTAGGCAATCGTGGGAATGGACGCATGACCCG
GCAACCGAATCAGAAGAAGG

Downstream 100 bases:

>100_bases
ACGAACAAGCCAGGCACGAAGCCTGGCTTGTCATTGGGATTCCGCTCGCGCTTGCCAGCGTTACAGAATCTGCTTACCGA
TCCACCAGGCAATGGCGGAC

Product: putative cell wall-associated hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MPQRPFHSPSRRLSLSALCAAALLLAACAGGPPARQGASLPRTPGKPIVDPSAGLEEVSIQAMSLVGTPYRYGGNTPDSG
FDCSGLVRYVVQRAASVNLPRTTEQMGQRGTALDRRDVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPATGGTVRLEDM
TKSYWASRYNGARRVVAAGSLDMTPVPSPVPSAPITPPAPDDDDPIAAFANR

Sequences:

>Translated_212_residues
MPQRPFHSPSRRLSLSALCAAALLLAACAGGPPARQGASLPRTPGKPIVDPSAGLEEVSIQAMSLVGTPYRYGGNTPDSG
FDCSGLVRYVVQRAASVNLPRTTEQMGQRGTALDRRDVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPATGGTVRLEDM
TKSYWASRYNGARRVVAAGSLDMTPVPSPVPSAPITPPAPDDDDPIAAFANR
>Mature_211_residues
PQRPFHSPSRRLSLSALCAAALLLAACAGGPPARQGASLPRTPGKPIVDPSAGLEEVSIQAMSLVGTPYRYGGNTPDSGF
DCSGLVRYVVQRAASVNLPRTTEQMGQRGTALDRRDVASGDLVFFNTTGRANSHVGIYVGQNRFVHAPATGGTVRLEDMT
KSYWASRYNGARRVVAAGSLDMTPVPSPVPSAPITPPAPDDDDPIAAFANR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=41.8032786885246, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1786421, Length=136, Percent_Identity=36.0294117647059, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788501, Length=173, Percent_Identity=34.6820809248555, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1788001, Length=124, Percent_Identity=41.9354838709677, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 22287; Mature: 22156

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRPFHSPSRRLSLSALCAAALLLAACAGGPPARQGASLPRTPGKPIVDPSAGLEEVSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHH
QAMSLVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTTEQMGQRGTALDRRDVAS
HHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
GDLVFFNTTGRANSHVGIYVGQNRFVHAPATGGTVRLEDMTKSYWASRYNGARRVVAAGS
CCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEEEECC
LDMTPVPSPVPSAPITPPAPDDDDPIAAFANR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
PQRPFHSPSRRLSLSALCAAALLLAACAGGPPARQGASLPRTPGKPIVDPSAGLEEVSI
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHH
QAMSLVGTPYRYGGNTPDSGFDCSGLVRYVVQRAASVNLPRTTEQMGQRGTALDRRDVAS
HHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
GDLVFFNTTGRANSHVGIYVGQNRFVHAPATGGTVRLEDMTKSYWASRYNGARRVVAAGS
CCEEEEECCCCCCCEEEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHCCCEEEEEECC
LDMTPVPSPVPSAPITPPAPDDDDPIAAFANR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]