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The map label for this gene is nodW [H]

Identifier: 94310853

GI number: 94310853

Start: 2083961

End: 2084368

Strand: Reverse

Name: nodW [H]

Synonym: Rmet_1915

Alternate gene names: 94310853

Gene position: 2084368-2083961 (Counterclockwise)

Preceding gene: 94310856

Following gene: 94310851

Centisome position: 53.06

GC content: 60.29

Gene sequence:

>408_bases
ATGGGCATTCATATTCCGATCATCTTCATGACTGGGTACGGAGACATCGCCATGAGCGTCGCAGCCATGAAGGCCGGGGC
CGAAGACTTCATGGCCAAGCCGTTTCGCGACCAGGATTTGCTGGACGCCGTATCCGCCGCGCTGGAGAAAGACCGTTTGC
GCCGCCAGGCGGTTGGCAAGGTTGATGAGATTCGGGCGAACTACGCCACACTCACGCCACGCGAATCCGAAGTCATGGGA
CTGGCCGTGACAGGACTGCTGAACAAGCAGATTGCGGGCGAGATCGGCATCAGCGAGGTTACCGTCAAGATTCACCGCGG
GCAGGCGATGCGCAAGATGCGGGCGCGCACGTTTGCTGATCTGGTATTGCTGGCGCAGCAGCTCGGTATCTGCAGGGCCG
ATCGCTGA

Upstream 100 bases:

>100_bases
CATTGTTCTTCAGCGTCTGACGATCAATGGACTGAATGCCGAACGCCATCTGCGGCTGCGTGGCCAGAGCGGACTGGATC
TGCAGGCCAGGCTGGGGCAG

Downstream 100 bases:

>100_bases
CCGATTGTCAGGACGTTGCGCGGGAGAGGGTTCCCCCGCGCGATTGACATGCTCAGGCGATCAGCGTCCGGGCGACCAGC
GTTGCGGCCGCCACGCTTGA

Product: two component transcriptional regulator, LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MGIHIPIIFMTGYGDIAMSVAAMKAGAEDFMAKPFRDQDLLDAVSAALEKDRLRRQAVGKVDEIRANYATLTPRESEVMG
LAVTGLLNKQIAGEIGISEVTVKIHRGQAMRKMRARTFADLVLLAQQLGICRADR

Sequences:

>Translated_135_residues
MGIHIPIIFMTGYGDIAMSVAAMKAGAEDFMAKPFRDQDLLDAVSAALEKDRLRRQAVGKVDEIRANYATLTPRESEVMG
LAVTGLLNKQIAGEIGISEVTVKIHRGQAMRKMRARTFADLVLLAQQLGICRADR
>Mature_134_residues
GIHIPIIFMTGYGDIAMSVAAMKAGAEDFMAKPFRDQDLLDAVSAALEKDRLRRQAVGKVDEIRANYATLTPRESEVMGL
AVTGLLNKQIAGEIGISEVTVKIHRGQAMRKMRARTFADLVLLAQQLGICRADR

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 14788; Mature: 14656

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIHIPIIFMTGYGDIAMSVAAMKAGAEDFMAKPFRDQDLLDAVSAALEKDRLRRQAVGK
CCEEEEEEEEECCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
VDEIRANYATLTPRESEVMGLAVTGLLNKQIAGEIGISEVTVKIHRGQAMRKMRARTFAD
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH
LVLLAQQLGICRADR
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
GIHIPIIFMTGYGDIAMSVAAMKAGAEDFMAKPFRDQDLLDAVSAALEKDRLRRQAVGK
CEEEEEEEEECCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
VDEIRANYATLTPRESEVMGLAVTGLLNKQIAGEIGISEVTVKIHRGQAMRKMRARTFAD
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH
LVLLAQQLGICRADR
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]