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The map label for this gene is yedQ [H]

Identifier: 94310810

GI number: 94310810

Start: 2031388

End: 2033148

Strand: Direct

Name: yedQ [H]

Synonym: Rmet_1872

Alternate gene names: 94310810

Gene position: 2031388-2033148 (Clockwise)

Preceding gene: 335055554

Following gene: 94310811

Centisome position: 51.71

GC content: 63.15

Gene sequence:

>1761_bases
ATGCACTCCGCCTCCGATACCGGACAACTGGTCCCGTCCGACAGGTTCCTGAGCCGGCTATGGCTTGCGCTCATCAGGCG
CCCTCGCCGCTTCATTCTGATTGCGTTCAGCGCCGCCATTCTCCTGATTTTGCTGCTCATCTTCCGAGGCATGATGCTGT
CGCGCGACGCGGAGATCGAGTCGGTCAGGCAAATGCAGGCGGTTCGTGCCGTGAGCATCAACGCGCTGCTTCAACTGGAG
GCGGAGCGCCTGACGAACATCCGGAACTACGCCGAGCACCTGATGCAGATCCAGGACGAATTGCCAGCCCTCTTCGCCCA
CGACATCCAGACTGCCTTCGAGCACCGCAATGACGATGTCTGGGCGCTGCGGACACGTGACGCGGCGCCCGTCTTTGGCG
TCAGCGCGGCGCAGCTCACTGGGCTGGATGGCTTCTTGCGCGACGATGCCAAGCTGATCCCGAGCATGGCGGTCGCAATC
GCGCTCAGCCATATGTTCAGTGCGGGACACAACGAACCCGGGCTCCGGGAACGCATTGCCTATGTGTCCGGCAACGGCAT
CATCGTGGCTTACCCGGCCATTAGCGAACAGGACGTTAATCCCACCCTGCGGAGCCTCGCCTCCGCCGCGTACTTTCGCA
ATAACCTCCCCTTGGCCAATCCAACGCGAAAGCAGCAATGGAGCATCGCGCGGTCTATGGACGACATTGGCGAATCGTCA
CTATTCCTGAGCGCTCCTGTCTATGCCGGCAACGCGTTCAAGGCCGTTCTGATCCTGGAGATTCCGCGGCACAGTCTTGA
CGAGTCCCTCAACGTTGCCCCCCATCACGACGTCAACAACTACCTGGTGGACCACAACGGCGCGCTCGTGGGCGCCAGTA
TGCGAAACGTGCACCGGGGCGAATCGCTCGCCTCCGTGCTCATCAACAAATGGCCAGCGGACAAGCTCGCGGTGGCATTC
AGGAGCGATGCCGGCATCCTGAGCAACGAGCATGGCAGCCGCCTCATTTATCGCAAGCTCGGAAACAGCGGCCTGATCAT
GGTCGACGAGGTCTCCACCCGTGAACTGCTACAGGCAAGCGTCGCCCGCCTGAGCGGCGCCATCGGCGCCGGCGCTGTCG
CCCTGGGCCTTCTGCTCTGCTTCACGCTGGCAATTGTCCATACATTGTTCGGGCACTACATTGCCCGGGGCGAAGCCCTC
CGGACCCTCGCCGAAACCGATGCCCTGACCGGGTTGGCGAACCGTCGCGTGTTCGCATCCCGATTCGCAGACGCCTACGC
ATGGTGCAAGCGGGACGCCGTTCCGGTCTCGCTGATCATGCTCGACATCGACCGTTTCAAGAAGATCAACGACCGCTGGG
GACACGCCAGCGGAGACGTGGTACTGCGTACCCTGGCGGACGCGCTGCGCGCGAATGTCCGGAATGTCGATCTGCCGGCG
CGACTTGGCGGCGAGGAGTTTGCCGTCCTGTTGCCACGCACGGGTATCGCGGATGCAGCCAACCTGGCCGAGAAGCTTCG
CCTGGCCCTGCAGGCATTGGTCTGCGAACCGGTCGACAGCGACGACACGGCATCCATCCGTTTCACCGCGTCCTTCGGCG
TGGCGCAGATTGCGCCGGACGAACCGGGCAACCTCGACTCGCTGCTGATGGTGGCGGACCAACGCCTCTATGCCGCGAAG
GCCGGCGGCCGGAACAAGGTCGTCTGGGATGAGCCGCAGCCGGAGGAGATGGCTAACGAGAAGCCCGTCAAGGGGACCTG
A

Upstream 100 bases:

>100_bases
GACGGTTTTGAATCCGGCACGATACGACTTCCCGTCGCACAAAAGCCATCACGTTCCAGATCGGGCACCGGCCATGGTCA
CGTATTGAAGAACAATCAAC

Downstream 100 bases:

>100_bases
TCTCGTCTGCCTGATCGCCCGGGCGATTCGATCCTGGCATCGAATGGGGTTTCTTGCCGCGCGTGCGGATATAGCGTCCG
TCCCTATGTCCCGCCGATGC

Product: putative diguanylate cyclase YedQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 586

Protein sequence:

>586_residues
MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIESVRQMQAVRAVSINALLQLE
AERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDVWALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAI
ALSHMFSAGHNEPGLRERIAYVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESS
LFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRGESLASVLINKWPADKLAVAF
RSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQASVARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEAL
RTLAETDALTGLANRRVFASRFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPA
RLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLMVADQRLYAAK
AGGRNKVVWDEPQPEEMANEKPVKGT

Sequences:

>Translated_586_residues
MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIESVRQMQAVRAVSINALLQLE
AERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDVWALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAI
ALSHMFSAGHNEPGLRERIAYVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESS
LFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRGESLASVLINKWPADKLAVAF
RSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQASVARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEAL
RTLAETDALTGLANRRVFASRFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPA
RLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLMVADQRLYAAK
AGGRNKVVWDEPQPEEMANEKPVKGT
>Mature_586_residues
MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIESVRQMQAVRAVSINALLQLE
AERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDVWALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAI
ALSHMFSAGHNEPGLRERIAYVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESS
LFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRGESLASVLINKWPADKLAVAF
RSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQASVARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEAL
RTLAETDALTGLANRRVFASRFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPA
RLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLMVADQRLYAAK
AGGRNKVVWDEPQPEEMANEKPVKGT

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=573, Percent_Identity=27.0506108202443, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=40.9356725146199, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=35.5421686746988, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=33.3333333333333, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787816, Length=202, Percent_Identity=37.1287128712871, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=32.3353293413174, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=34.2391304347826, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=32.2222222222222, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=34.1317365269461, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=134, Percent_Identity=35.0746268656716, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=162, Percent_Identity=31.4814814814815, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787056, Length=134, Percent_Identity=36.5671641791045, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=35.2601156069364, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64031; Mature: 64031

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIE
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHH
SVRQMQAVRAVSINALLQLEAERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
WALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAIALSHMFSAGHNEPGLRERIA
EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHE
YVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESS
EEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
LFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRG
EEEECCEECCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHH
ESLASVLINKWPADKLAVAFRSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQAS
HHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCEEHHHHCCCCCEEEEECCCHHHHHHHH
VARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFAS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPA
HHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCH
RLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPD
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCC
EPGNLDSLLMVADQRLYAAKAGGRNKVVWDEPQPEEMANEKPVKGT
CCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MHSASDTGQLVPSDRFLSRLWLALIRRPRRFILIAFSAAILLILLLIFRGMMLSRDAEIE
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHH
SVRQMQAVRAVSINALLQLEAERLTNIRNYAEHLMQIQDELPALFAHDIQTAFEHRNDDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
WALRTRDAAPVFGVSAAQLTGLDGFLRDDAKLIPSMAVAIALSHMFSAGHNEPGLRERIA
EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHE
YVSGNGIIVAYPAISEQDVNPTLRSLASAAYFRNNLPLANPTRKQQWSIARSMDDIGESS
EEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
LFLSAPVYAGNAFKAVLILEIPRHSLDESLNVAPHHDVNNYLVDHNGALVGASMRNVHRG
EEEECCEECCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHH
ESLASVLINKWPADKLAVAFRSDAGILSNEHGSRLIYRKLGNSGLIMVDEVSTRELLQAS
HHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCEEHHHHCCCCCEEEEECCCHHHHHHHH
VARLSGAIGAGAVALGLLLCFTLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFAS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFADAYAWCKRDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPA
HHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCH
RLGGEEFAVLLPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPD
HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCC
EPGNLDSLLMVADQRLYAAKAGGRNKVVWDEPQPEEMANEKPVKGT
CCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]