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The map label for this gene is glcD [C]

Identifier: 94310713

GI number: 94310713

Start: 1926291

End: 1927682

Strand: Direct

Name: glcD [C]

Synonym: Rmet_1775

Alternate gene names: 94310713

Gene position: 1926291-1927682 (Clockwise)

Preceding gene: 94310711

Following gene: 94310715

Centisome position: 49.04

GC content: 66.74

Gene sequence:

>1392_bases
ATGCGATCAGATCGGCAAGAGGCATCCGGGGACGGCGGCAATCCAGGGTTCGAGGCGTTCCGGCAGGCGTTGGGTGGCCA
ACTCGTCCAGCGCGGGGATCCTGACTACGATATGGCGCGCAAGGTCTGGAATGGCGCAATCGACAAGCATCCGGCGTTGG
TCGTCTACTGCGCCGACGCCACCGACGTGGCAGGCGCCGTACGGTTCGCCCGGGCCACCGGCCTGACCATCGCGGTTCGC
AGCGGGGGGCACAATCTCGCCGGACTTTCCACGTGTGACAACGGCATCGTCATTGATCTGTCGCGTATGAAGCGCATCGA
CGTGGATGTCGCGCGGCGCCGCGCCCGCGCGGAGGCAGGGCTCAATCTCGGTGAGTTCGACCAGGCAACGCTGCGGCATG
GCCTGGCCACGACGATGGGGGTCAATAGCGATACGGGTATCGCCGGGCTGACGCTGGGGGGCGGGTTCGGCAAGCTGGGC
CGCAAGTACGGGCTGAGCTGCGACAACCTGGAGGCCGTGGAAATCGTCACCGCCGACGGGGAACGGCTGCACGCCAGCAC
GACCGAGCACCCGGACCTGTTCTGGGCGATACGCGGCGGCGGTGGCAATTTCGGCATCGTCACGGCGTTCCATTTCCGTC
TGCATCCGATTCCCGCCAGACTGCCGGTATGCGCCGTGGTCTACCCGTGGGATCAGGCTCGGGAGGCGATGCTGCACTAC
GATGCTTTCGCCCGCGCCGCCCCGGATGACGTTGCGGCCGACGCCGCGCTCGTCACCCAGCCATCGGGCGAGCGATGTCT
CAGCATCTCGGCGTGTCATGTCGGGCCAGATGGCACTGAAGAGACAAGGCAAGCAGCGCTGCGCCCGCTGGTCGAGTTCG
GCAATCCGGTCGACGCCCAACTCGACTTCGTTCCGTATCTGCAGATGCAGTCGGCCAGCGATGCGCTCTTCGCGCGCGGC
CGGCGGTATTACTGGAAGGCCCAGTTCCTCCGCCAGATTCGCGCGGAGGCGGTCGACGCTCTCCTCGCTGCCTATGCCCT
AGCGCCCTCGCCGGGCTGCCTGGTGGTGTTCCAGCAGGTCGGCGGCGCCATCGCCCGCGTACCCGACGAGGCCACCGCAT
ATGGAAACCGGTCGGCGGACTTCGACTGCTTCCCGCTGGCCATCTGGGATGACCCGGCCGACGACGACAAACACCGGGAG
TGGGCGCGCGGCCTGTGGGAAGCGGTCCAGCCGTACTCGACGGGCGGGGTGTACGCCAACAACCTCGGCGACGAAGGCGC
CCAACGCACCCGCGCCGCGTATGGCGTCAACCATTCACGGCTGGTTGCCGTGAAACGCCAATACGATCCTGACAACGCTT
TCAGGCTGAATCAGAACATCGACCCGGCCTGA

Upstream 100 bases:

>100_bases
GGTGAGCTTTTCTCATCTACAAGCTGAGATCTTTGCCTTTGCACCCGACCGCCGCGCGCACCACCATGGTCTCGGGGGCG
TGACCAACTTGGGGGGCGTG

Downstream 100 bases:

>100_bases
TCCCGACCCGATGCCCGATGCCCGATGCCCGATGCCCGATGCCCGATGCCCGATATCGGTGTCTACTGTGCGTCGAGCGC
CTTCAGGATCTGGTACGCCG

Product: putative FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: 6-HDNO [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MRSDRQEASGDGGNPGFEAFRQALGGQLVQRGDPDYDMARKVWNGAIDKHPALVVYCADATDVAGAVRFARATGLTIAVR
SGGHNLAGLSTCDNGIVIDLSRMKRIDVDVARRRARAEAGLNLGEFDQATLRHGLATTMGVNSDTGIAGLTLGGGFGKLG
RKYGLSCDNLEAVEIVTADGERLHASTTEHPDLFWAIRGGGGNFGIVTAFHFRLHPIPARLPVCAVVYPWDQAREAMLHY
DAFARAAPDDVAADAALVTQPSGERCLSISACHVGPDGTEETRQAALRPLVEFGNPVDAQLDFVPYLQMQSASDALFARG
RRYYWKAQFLRQIRAEAVDALLAAYALAPSPGCLVVFQQVGGAIARVPDEATAYGNRSADFDCFPLAIWDDPADDDKHRE
WARGLWEAVQPYSTGGVYANNLGDEGAQRTRAAYGVNHSRLVAVKRQYDPDNAFRLNQNIDPA

Sequences:

>Translated_463_residues
MRSDRQEASGDGGNPGFEAFRQALGGQLVQRGDPDYDMARKVWNGAIDKHPALVVYCADATDVAGAVRFARATGLTIAVR
SGGHNLAGLSTCDNGIVIDLSRMKRIDVDVARRRARAEAGLNLGEFDQATLRHGLATTMGVNSDTGIAGLTLGGGFGKLG
RKYGLSCDNLEAVEIVTADGERLHASTTEHPDLFWAIRGGGGNFGIVTAFHFRLHPIPARLPVCAVVYPWDQAREAMLHY
DAFARAAPDDVAADAALVTQPSGERCLSISACHVGPDGTEETRQAALRPLVEFGNPVDAQLDFVPYLQMQSASDALFARG
RRYYWKAQFLRQIRAEAVDALLAAYALAPSPGCLVVFQQVGGAIARVPDEATAYGNRSADFDCFPLAIWDDPADDDKHRE
WARGLWEAVQPYSTGGVYANNLGDEGAQRTRAAYGVNHSRLVAVKRQYDPDNAFRLNQNIDPA
>Mature_463_residues
MRSDRQEASGDGGNPGFEAFRQALGGQLVQRGDPDYDMARKVWNGAIDKHPALVVYCADATDVAGAVRFARATGLTIAVR
SGGHNLAGLSTCDNGIVIDLSRMKRIDVDVARRRARAEAGLNLGEFDQATLRHGLATTMGVNSDTGIAGLTLGGGFGKLG
RKYGLSCDNLEAVEIVTADGERLHASTTEHPDLFWAIRGGGGNFGIVTAFHFRLHPIPARLPVCAVVYPWDQAREAMLHY
DAFARAAPDDVAADAALVTQPSGERCLSISACHVGPDGTEETRQAALRPLVEFGNPVDAQLDFVPYLQMQSASDALFARG
RRYYWKAQFLRQIRAEAVDALLAAYALAPSPGCLVVFQQVGGAIARVPDEATAYGNRSADFDCFPLAIWDDPADDDKHRE
WARGLWEAVQPYSTGGVYANNLGDEGAQRTRAAYGVNHSRLVAVKRQYDPDNAFRLNQNIDPA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094
- InterPro:   IPR006093 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: =1.5.3.6 [H]

Molecular weight: Translated: 49958; Mature: 49958

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00862 OX2_COVAL_FAD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDRQEASGDGGNPGFEAFRQALGGQLVQRGDPDYDMARKVWNGAIDKHPALVVYCADA
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCC
TDVAGAVRFARATGLTIAVRSGGHNLAGLSTCDNGIVIDLSRMKRIDVDVARRRARAEAG
HHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEEHHHHHHCCHHHHHHHHHHHHC
LNLGEFDQATLRHGLATTMGVNSDTGIAGLTLGGGFGKLGRKYGLSCDNLEAVEIVTADG
CCCCCCHHHHHHHCCHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCC
ERLHASTTEHPDLFWAIRGGGGNFGIVTAFHFRLHPIPARLPVCAVVYPWDQAREAMLHY
CEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHH
DAFARAAPDDVAADAALVTQPSGERCLSISACHVGPDGTEETRQAALRPLVEFGNPVDAQ
HHHHHCCCCHHHCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE
LDFVPYLQMQSASDALFARGRRYYWKAQFLRQIRAEAVDALLAAYALAPSPGCLVVFQQV
EEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHH
GGAIARVPDEATAYGNRSADFDCFPLAIWDDPADDDKHREWARGLWEAVQPYSTGGVYAN
CCCEEECCCHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEC
NLGDEGAQRTRAAYGVNHSRLVAVKRQYDPDNAFRLNQNIDPA
CCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCC
>Mature Secondary Structure
MRSDRQEASGDGGNPGFEAFRQALGGQLVQRGDPDYDMARKVWNGAIDKHPALVVYCADA
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEECCC
TDVAGAVRFARATGLTIAVRSGGHNLAGLSTCDNGIVIDLSRMKRIDVDVARRRARAEAG
HHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCEEEEHHHHHHCCHHHHHHHHHHHHC
LNLGEFDQATLRHGLATTMGVNSDTGIAGLTLGGGFGKLGRKYGLSCDNLEAVEIVTADG
CCCCCCHHHHHHHCCHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCEEEEEECCC
ERLHASTTEHPDLFWAIRGGGGNFGIVTAFHFRLHPIPARLPVCAVVYPWDQAREAMLHY
CEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHH
DAFARAAPDDVAADAALVTQPSGERCLSISACHVGPDGTEETRQAALRPLVEFGNPVDAQ
HHHHHCCCCHHHCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE
LDFVPYLQMQSASDALFARGRRYYWKAQFLRQIRAEAVDALLAAYALAPSPGCLVVFQQV
EEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHH
GGAIARVPDEATAYGNRSADFDCFPLAIWDDPADDDKHREWARGLWEAVQPYSTGGVYAN
CCCEEECCCHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEC
NLGDEGAQRTRAAYGVNHSRLVAVKRQYDPDNAFRLNQNIDPA
CCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3622516; 2680607; 2115879 [H]