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The map label for this gene is ltrA [H]

Identifier: 94310695

GI number: 94310695

Start: 1906833

End: 1907726

Strand: Direct

Name: ltrA [H]

Synonym: Rmet_1757

Alternate gene names: 94310695

Gene position: 1906833-1907726 (Clockwise)

Preceding gene: 94310691

Following gene: 335055548

Centisome position: 48.54

GC content: 64.54

Gene sequence:

>894_bases
ATGGACCTGAACGCGCTGGCATTGCTGGTCGAAATCATCGACGCCGGAAACCTGAGCCGAGCTGCAAACCAGCTCGGCAT
GAGCCGCGCCAATGTGAGCAAGCGGCTCAACCATTTCGAGCGGCAGTTGGGCGCCGAACTGCTGAGGCGCAGCACCCGGC
AGCTCGAACCCACGGAACTGGGATGGCAGCTCTACGAACATGGCCGCGCGATCCGCCACGAGTTGATGGCGGCCCAGGAG
TCGGTGCAGAGCCTGGGCAAGCGCCTGAGCGGCACGGTGCGGCTCAGCGTGCCAAGCGGATTCGGCCAGCACACCATGTC
AGCCTGGTTTATCGAATTCATGACGATGTACCCGGCCATCACGCTCAACGTGATTTTCGATAATGACATCGAGGACCTGA
TCAAGGGCGCGGTGGACTTCTCCATCCGTGTCATGGCGGAAACGCCCGCCAATGCCGTGGCCCATAGCCTGGGCGATGTC
GAGTACGTGGCCTGCGTCACGCCGGCGCTGGTAAGCCAATACGGTATGCCGCACACCCTCGACCAGTTTCGAGACCTGCC
GCTGATCACGTCGGAACTGACCGGCCAGAAACTCCACGCAGCGGGCCGGGCGGGCGCGGCCGGCGGGACACGGCCTATCC
GACCCCGCCTGATGTCGGCCAATTTCTTCTTCCTGCGCGACGCCATCCTTCAGGGCCTGGGCGTCGGCCTGGTGCCCCGC
TACATGGTGGAGCGCGACCTCGCCGCCGGCACCTTGCTGCAGTTGCCCCTGCCTCCGCAGGACCTGGCGTTCCTGCGCAC
CACCATGTACCTGCTGTACATGCCGGCCCGCTACCAGACGCGTGCGTTTACGACTCTTGTCGCCTTCCTGCGCGACAAGG
CTGCAGGCCGATGA

Upstream 100 bases:

>100_bases
GGGAGGTCCGGTTTTCTTTACCAGCGGTGATTGTCCATATGTTCCGAATGCTTGACAATTGCAACCGGTTTTCAACATAT
ATGAATACTCAAGGTTGACA

Downstream 100 bases:

>100_bases
GCCGAGTTGTTCACATGAGTGCAAGGGGCGGAACCCCGCTACGTTGAGCACGGCACAACTGCCTGCCCTCGTGGAGACGG
CAACGCGCAAGTGGTCCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTELGWQLYEHGRAIRHELMAAQE
SVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAITLNVIFDNDIEDLIKGAVDFSIRVMAETPANAVAHSLGDV
EYVACVTPALVSQYGMPHTLDQFRDLPLITSELTGQKLHAAGRAGAAGGTRPIRPRLMSANFFFLRDAILQGLGVGLVPR
YMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTLVAFLRDKAAGR

Sequences:

>Translated_297_residues
MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTELGWQLYEHGRAIRHELMAAQE
SVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAITLNVIFDNDIEDLIKGAVDFSIRVMAETPANAVAHSLGDV
EYVACVTPALVSQYGMPHTLDQFRDLPLITSELTGQKLHAAGRAGAAGGTRPIRPRLMSANFFFLRDAILQGLGVGLVPR
YMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTLVAFLRDKAAGR
>Mature_297_residues
MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTELGWQLYEHGRAIRHELMAAQE
SVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAITLNVIFDNDIEDLIKGAVDFSIRVMAETPANAVAHSLGDV
EYVACVTPALVSQYGMPHTLDQFRDLPLITSELTGQKLHAAGRAGAAGGTRPIRPRLMSANFFFLRDAILQGLGVGLVPR
YMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTLVAFLRDKAAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=251, Percent_Identity=28.6852589641434, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.6206896551724, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693193, Length=264, Percent_Identity=25.7575757575758, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789639, Length=176, Percent_Identity=27.8409090909091, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87081978, Length=257, Percent_Identity=24.9027237354086, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787589, Length=302, Percent_Identity=25.4966887417219, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=286, Percent_Identity=24.8251748251748, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=154, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787128, Length=201, Percent_Identity=20.8955223880597, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=107, Percent_Identity=32.7102803738318, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32871; Mature: 32871

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTEL
CCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GWQLYEHGRAIRHELMAAQESVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
TLNVIFDNDIEDLIKGAVDFSIRVMAETPANAVAHSLGDVEYVACVTPALVSQYGMPHTL
EEEEEECCCHHHHHHHHHCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
DQFRDLPLITSELTGQKLHAAGRAGAAGGTRPIRPRLMSANFFFLRDAILQGLGVGLVPR
HHHCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCHHHH
YMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTLVAFLRDKAAGR
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDLNALALLVEIIDAGNLSRAANQLGMSRANVSKRLNHFERQLGAELLRRSTRQLEPTEL
CCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GWQLYEHGRAIRHELMAAQESVQSLGKRLSGTVRLSVPSGFGQHTMSAWFIEFMTMYPAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
TLNVIFDNDIEDLIKGAVDFSIRVMAETPANAVAHSLGDVEYVACVTPALVSQYGMPHTL
EEEEEECCCHHHHHHHHHCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
DQFRDLPLITSELTGQKLHAAGRAGAAGGTRPIRPRLMSANFFFLRDAILQGLGVGLVPR
HHHCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCHHHH
YMVERDLAAGTLLQLPLPPQDLAFLRTTMYLLYMPARYQTRAFTTLVAFLRDKAAGR
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]