Click here to switch to the map view.

The map label for this gene is 94310671

Identifier: 94310671

GI number: 94310671

Start: 1877665

End: 1878861

Strand: Reverse

Name: 94310671

Synonym: Rmet_1733

Alternate gene names: NA

Gene position: 1878861-1877665 (Counterclockwise)

Preceding gene: 94310672

Following gene: 94310669

Centisome position: 47.83

GC content: 63.24

Gene sequence:

>1197_bases
ATGAAGCTCAAGGGCATGGCCATGGCCGCACTGCTCGCCTGTACCGGCAGCGCCTACGCGCAGTCTGCCGTTACGCTCTA
CGGCGTGCTCGACACCAGCCTGGAATTCGCAAACCATGTGGCGCCGTACTCGGCCGCGGGCTTTACCGCGAATCCGGGCG
CCGGCAACAATGTGTTCCGCGTGAACTCCGGCGGCCTGTCTGGTTCGCGTTGGGGTCTTCGTGGTACGGAGGATCTCGGC
GGCGGCCTGAAGAGCATCTTCGTGCTGGAAAGCGGTATTTCCGTCGATAACGGCACGATGCAGCAGAGCAACCGTCTGTT
CGGTCGTCAGGCATTCGTCGGTATCTCGCACAACACCTACGGTCAGATCACGCTGGGTCGCCAGTACACCTCGCTGTTCG
TGGCGATGGCCAACTTCATGCCGACGGCGTATGCCACGCAGTACGAACCGGCGGCATTCATGGCCGGTAACAACTTCCGT
GAAGACAACACCATTGCCTACACGGGCGTGTTCGGTCCGGTGACCGCGCTGGCCCACTTCTCGTTCGGCGCTGGTGTGCC
GAACCTGGCGATCCAGGGCGGTGCAAGCGCCTTCGGTGGCAACGGTGAAGTCCCGGGCGCATTCCGCCGCGACAGCGCCT
TCGGCGGCGCATTCACGTACTCGGCTGGCCCGTTTGGTGCAGCGATTGCCTATGACCAGTGGAACCCGTCGGTCAACAAC
GCCGCCGGCGTCTACCAGGGCACCACTGCCACGCTGAAGAAGGCTTCGGTGGCCGGCAGCTACGCCATCGGCCAGGTCGC
CAAGATCATGGCTGGCTACCGCTGGGGCAAGGTCGATAACAACGGTACCGGCGCCCAGCTTCAGCGCGACGACTACTACT
GGATCGGCGCGAACTATCAGGTGACGCCTGCTGTGGGCCTGACGCTGGAGTATGACTACGACAACCTCAAGCGCGACTAC
TTCAACAACACCCACGCACCGAATCCGTGGCAGATCGCCTTCGTGGCGGACTACAGCTTCTCGAAGCGTACCGACGTGTA
CCTGAGCGCCGCATACGCCAAGAATGCCGGCCTGACGCTGGACGCCGCGAACACGAACCAGCTGGCCACGACCGGCGCCA
CCGGCAACAGCTACATTCTCGGCACCGGCCAGAGCAGCATGGTGGGTGTGAGCCTGGGCCTTCGCCACAAGTTCTGA

Upstream 100 bases:

>100_bases
GCACACCGATTTTTGTTTTGTCCACAGAAGTAACCGCAGTAACCATTTCCGACGGGAACCCCCCAAATAGCAATCGAGAA
AAAAGAGAGGAGATTGACCT

Downstream 100 bases:

>100_bases
CCCAATTCGGATTGGTTCTACTGGCGTGAATCGGCCAGGCGAGTTTTACCCGTTCCCCTCGCCTGGTCCGATTCGATGTT
CGCCTTTGGTCGCACGGGCC

Product: outer membrane protein (porin)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKLKGMAMAALLACTGSAYAQSAVTLYGVLDTSLEFANHVAPYSAAGFTANPGAGNNVFRVNSGGLSGSRWGLRGTEDLG
GGLKSIFVLESGISVDNGTMQQSNRLFGRQAFVGISHNTYGQITLGRQYTSLFVAMANFMPTAYATQYEPAAFMAGNNFR
EDNTIAYTGVFGPVTALAHFSFGAGVPNLAIQGGASAFGGNGEVPGAFRRDSAFGGAFTYSAGPFGAAIAYDQWNPSVNN
AAGVYQGTTATLKKASVAGSYAIGQVAKIMAGYRWGKVDNNGTGAQLQRDDYYWIGANYQVTPAVGLTLEYDYDNLKRDY
FNNTHAPNPWQIAFVADYSFSKRTDVYLSAAYAKNAGLTLDAANTNQLATTGATGNSYILGTGQSSMVGVSLGLRHKF

Sequences:

>Translated_398_residues
MKLKGMAMAALLACTGSAYAQSAVTLYGVLDTSLEFANHVAPYSAAGFTANPGAGNNVFRVNSGGLSGSRWGLRGTEDLG
GGLKSIFVLESGISVDNGTMQQSNRLFGRQAFVGISHNTYGQITLGRQYTSLFVAMANFMPTAYATQYEPAAFMAGNNFR
EDNTIAYTGVFGPVTALAHFSFGAGVPNLAIQGGASAFGGNGEVPGAFRRDSAFGGAFTYSAGPFGAAIAYDQWNPSVNN
AAGVYQGTTATLKKASVAGSYAIGQVAKIMAGYRWGKVDNNGTGAQLQRDDYYWIGANYQVTPAVGLTLEYDYDNLKRDY
FNNTHAPNPWQIAFVADYSFSKRTDVYLSAAYAKNAGLTLDAANTNQLATTGATGNSYILGTGQSSMVGVSLGLRHKF
>Mature_398_residues
MKLKGMAMAALLACTGSAYAQSAVTLYGVLDTSLEFANHVAPYSAAGFTANPGAGNNVFRVNSGGLSGSRWGLRGTEDLG
GGLKSIFVLESGISVDNGTMQQSNRLFGRQAFVGISHNTYGQITLGRQYTSLFVAMANFMPTAYATQYEPAAFMAGNNFR
EDNTIAYTGVFGPVTALAHFSFGAGVPNLAIQGGASAFGGNGEVPGAFRRDSAFGGAFTYSAGPFGAAIAYDQWNPSVNN
AAGVYQGTTATLKKASVAGSYAIGQVAKIMAGYRWGKVDNNGTGAQLQRDDYYWIGANYQVTPAVGLTLEYDYDNLKRDY
FNNTHAPNPWQIAFVADYSFSKRTDVYLSAAYAKNAGLTLDAANTNQLATTGATGNSYILGTGQSSMVGVSLGLRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41882; Mature: 41882

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKGMAMAALLACTGSAYAQSAVTLYGVLDTSLEFANHVAPYSAAGFTANPGAGNNVFR
CCCCHHHHHHHHHHCCCHHHHCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
VNSGGLSGSRWGLRGTEDLGGGLKSIFVLESGISVDNGTMQQSNRLFGRQAFVGISHNTY
EECCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCC
GQITLGRQYTSLFVAMANFMPTAYATQYEPAAFMAGNNFREDNTIAYTGVFGPVTALAHF
EEEEECCHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHH
SFGAGVPNLAIQGGASAFGGNGEVPGAFRRDSAFGGAFTYSAGPFGAAIAYDQWNPSVNN
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCC
AAGVYQGTTATLKKASVAGSYAIGQVAKIMAGYRWGKVDNNGTGAQLQRDDYYWIGANYQ
CCCEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEECCCEE
VTPAVGLTLEYDYDNLKRDYFNNTHAPNPWQIAFVADYSFSKRTDVYLSAAYAKNAGLTL
ECCEEEEEEEECHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCEEE
DAANTNQLATTGATGNSYILGTGQSSMVGVSLGLRHKF
ECCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCC
>Mature Secondary Structure
MKLKGMAMAALLACTGSAYAQSAVTLYGVLDTSLEFANHVAPYSAAGFTANPGAGNNVFR
CCCCHHHHHHHHHHCCCHHHHCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
VNSGGLSGSRWGLRGTEDLGGGLKSIFVLESGISVDNGTMQQSNRLFGRQAFVGISHNTY
EECCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCC
GQITLGRQYTSLFVAMANFMPTAYATQYEPAAFMAGNNFREDNTIAYTGVFGPVTALAHF
EEEEECCHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHH
SFGAGVPNLAIQGGASAFGGNGEVPGAFRRDSAFGGAFTYSAGPFGAAIAYDQWNPSVNN
HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCC
AAGVYQGTTATLKKASVAGSYAIGQVAKIMAGYRWGKVDNNGTGAQLQRDDYYWIGANYQ
CCCEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEECCCEE
VTPAVGLTLEYDYDNLKRDYFNNTHAPNPWQIAFVADYSFSKRTDVYLSAAYAKNAGLTL
ECCEEEEEEEECHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCEEE
DAANTNQLATTGATGNSYILGTGQSSMVGVSLGLRHKF
ECCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]