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The map label for this gene is virS [H]

Identifier: 94310670

GI number: 94310670

Start: 1876510

End: 1877532

Strand: Direct

Name: virS [H]

Synonym: Rmet_1732

Alternate gene names: 94310670

Gene position: 1876510-1877532 (Clockwise)

Preceding gene: 94310666

Following gene: 94310674

Centisome position: 47.77

GC content: 64.22

Gene sequence:

>1023_bases
ATGTCCTATTTTCTTCGCAGTGCCAGCCTGACCAATTACATGGAAGTTGCGCGCGCCGTAGGGCTCGATCCGCACCAGAT
GCTGCGTGCCGCCAAGATCAACCGGGACGTGCTGCTGGACCCGGATATCCGCATCCCCGCCGCATCGGTGGGGCGTCTGC
TCGAGGCGTCGGCGCGCGACGGGCACGCGGAGGATTTCGGCCTGCGACTGGCGGAGTTGCGGCAGTTCTCGAACCTGGGG
CCACTTGCCTTCGTGGTCCGCGAGGAACCCACGCTGCGCCGCGCGCTGGAGTCGATGGTGCGCTACATGGGCCTGCAGAA
CGAGTCCCTGGCAATGCGCGTGGAAGAGATGGATGGCTTGGTGGTGATCCGCCTGCAGATCCTCAGCGACCAGCCCGCAG
GCTCGATGCGGCAGGCTACTCAACTGGCCGCCGGGGTGATGTTCCGGATGCTCAGCATGTTTCTCGGGCCCGCGTGGCGC
CCGCGCAGCATCTGCTTTTCGCACGCGCCGCCCGAAAGCCAGACCACATACCTGCGCGTGTTCGGGATGCCCGCGCTGTT
CAATCAGGATTTCGACGGAATCGTCTGCGTGGCCTCCGATCTGGAAGCGCCGCTGCCGTCCTATGACCCGGTGATGGCGC
AGCAGGTCAAGCGCTACCTGGGCACGCTGCTGGCGCAATCGAATACCACCATGGCGGACAAGGTGCGCAAGCTCGTCTAC
GCATTGCTGCCAAGCGGCATGTGTTCGATCGACCGGGTGGCTCAGCACTTGGGAGTGGACCGGCGCACCATCCACCGCCG
ACTGGCGCAGGATGGCACCACTTATTCGCAGATCCTGAACGAGGCACGCGCAGGGCTGGCTACAAGCTACATCGAGAACC
GCTCACGCCCGCTGTCCGAAGTTGCGACGCTGCTCGGCTTTTCGTCGCTGAGCGCATTCTCGCGCTGGTTTGGCAACCAG
TTTGGCTGCAGCGTTTCGAAGTGGCGCACAACGCGAACGGGCGAACAGGTCGAGGAGACCTGA

Upstream 100 bases:

>100_bases
GAATGCGTACTTCGGTGCCGGAAGTATCGACGAACGGCATTGAAATATTTGACGACCAGGGACACACGATTTACATTTCG
GGACACTCAGGGAAAACACG

Downstream 100 bases:

>100_bases
TCGCCCAGAAGAAAATCGGCCACACGGACGGAGGCCCGTGCGACCAAAGGCGAACATCGAATCGGACCAGGCGAGGGGAA
CGGGTAAAACTCGCCTGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSYFLRSASLTNYMEVARAVGLDPHQMLRAAKINRDVLLDPDIRIPAASVGRLLEASARDGHAEDFGLRLAELRQFSNLG
PLAFVVREEPTLRRALESMVRYMGLQNESLAMRVEEMDGLVVIRLQILSDQPAGSMRQATQLAAGVMFRMLSMFLGPAWR
PRSICFSHAPPESQTTYLRVFGMPALFNQDFDGIVCVASDLEAPLPSYDPVMAQQVKRYLGTLLAQSNTTMADKVRKLVY
ALLPSGMCSIDRVAQHLGVDRRTIHRRLAQDGTTYSQILNEARAGLATSYIENRSRPLSEVATLLGFSSLSAFSRWFGNQ
FGCSVSKWRTTRTGEQVEET

Sequences:

>Translated_340_residues
MSYFLRSASLTNYMEVARAVGLDPHQMLRAAKINRDVLLDPDIRIPAASVGRLLEASARDGHAEDFGLRLAELRQFSNLG
PLAFVVREEPTLRRALESMVRYMGLQNESLAMRVEEMDGLVVIRLQILSDQPAGSMRQATQLAAGVMFRMLSMFLGPAWR
PRSICFSHAPPESQTTYLRVFGMPALFNQDFDGIVCVASDLEAPLPSYDPVMAQQVKRYLGTLLAQSNTTMADKVRKLVY
ALLPSGMCSIDRVAQHLGVDRRTIHRRLAQDGTTYSQILNEARAGLATSYIENRSRPLSEVATLLGFSSLSAFSRWFGNQ
FGCSVSKWRTTRTGEQVEET
>Mature_339_residues
SYFLRSASLTNYMEVARAVGLDPHQMLRAAKINRDVLLDPDIRIPAASVGRLLEASARDGHAEDFGLRLAELRQFSNLGP
LAFVVREEPTLRRALESMVRYMGLQNESLAMRVEEMDGLVVIRLQILSDQPAGSMRQATQLAAGVMFRMLSMFLGPAWRP
RSICFSHAPPESQTTYLRVFGMPALFNQDFDGIVCVASDLEAPLPSYDPVMAQQVKRYLGTLLAQSNTTMADKVRKLVYA
LLPSGMCSIDRVAQHLGVDRRTIHRRLAQDGTTYSQILNEARAGLATSYIENRSRPLSEVATLLGFSSLSAFSRWFGNQF
GCSVSKWRTTRTGEQVEET

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37915; Mature: 37784

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFLRSASLTNYMEVARAVGLDPHQMLRAAKINRDVLLDPDIRIPAASVGRLLEASARD
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC
GHAEDFGLRLAELRQFSNLGPLAFVVREEPTLRRALESMVRYMGLQNESLAMRVEEMDGL
CCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCE
VVIRLQILSDQPAGSMRQATQLAAGVMFRMLSMFLGPAWRPRSICFSHAPPESQTTYLRV
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEEEE
FGMPALFNQDFDGIVCVASDLEAPLPSYDPVMAQQVKRYLGTLLAQSNTTMADKVRKLVY
ECCHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ALLPSGMCSIDRVAQHLGVDRRTIHRRLAQDGTTYSQILNEARAGLATSYIENRSRPLSE
HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VATLLGFSSLSAFSRWFGNQFGCSVSKWRTTRTGEQVEET
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
SYFLRSASLTNYMEVARAVGLDPHQMLRAAKINRDVLLDPDIRIPAASVGRLLEASARD
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCC
GHAEDFGLRLAELRQFSNLGPLAFVVREEPTLRRALESMVRYMGLQNESLAMRVEEMDGL
CCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCE
VVIRLQILSDQPAGSMRQATQLAAGVMFRMLSMFLGPAWRPRSICFSHAPPESQTTYLRV
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEEEE
FGMPALFNQDFDGIVCVASDLEAPLPSYDPVMAQQVKRYLGTLLAQSNTTMADKVRKLVY
ECCHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ALLPSGMCSIDRVAQHLGVDRRTIHRRLAQDGTTYSQILNEARAGLATSYIENRSRPLSE
HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VATLLGFSSLSAFSRWFGNQFGCSVSKWRTTRTGEQVEET
HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]