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The map label for this gene is virS [H]

Identifier: 94310655

GI number: 94310655

Start: 1856503

End: 1857630

Strand: Reverse

Name: virS [H]

Synonym: Rmet_1715

Alternate gene names: 94310655

Gene position: 1857630-1856503 (Counterclockwise)

Preceding gene: 94310660

Following gene: 94310654

Centisome position: 47.29

GC content: 65.07

Gene sequence:

>1128_bases
TTGCAATCGCTGCATCCGGCTTTGCATTTCATGCCAACACGGCCTATCATCCACGCCGAGTACGACGCGGCATGGTCCAG
GGCACCCCGGGCACGTGACGCGCGAAAAACAAGATGGGAGACAAGCTTGAGAACACTGGTGCGCGCTGCGGCACTGACCA
ATTTCTTCGAGGTGGCGGCGGCGGAAGGCCTGAACCCACAGCCCTTGCTCCGGCAGGCCGGATTGACACGCGCGCTGCTG
ACCGATCCCGAGCAGCGGGTTCCGGTGGACGCGTGCGCGGTATTGCTGGAGGCCGCGGCGGATGCATCGTCCTGCCTCAC
CTTCGGGCTGCGCATGGCGGAGTCCCGGCAGTTATCGGATTTCGGCCTGATGAGCCTGCTGATCAGCCAGCAGCCCACGC
TGCGTGACGCGCTCGACACGATCATTCGTTACCGTCACCTGGTCAATGAGTCCGTGGCAATCATGGTGGAGTCGGCCGGC
AAGGTGGTCATGATCCGGCAGGAGGTGGTGCTCGGCGCGCCTTCCCGACAAGCCACCGAACTGGCCCTGGGCGTGGTGTT
TCGCTTGTGCCGCGCCCTGCTCGGCGCGCATTGGCATCCACTCAGCGTCAACTTTACCCATGCCGCGCCGCCCGACCTGC
AGGTGCACCGCCGGTTGTTCGGATGCCCACTGGAGTTCGGCAGCGAGTTCAGCGGCATTGTCTGCCTGGCGGCAGACCTC
GACGCGCCAAATCCGACCGGCGACCCGGCCATGGCTCGCCATGCGCAGCGACTGGTGGATACCCTGCCCCGTGTGAACGA
GGCGTCGATCGGGCGTGAAGTGCGCAATGCGGTGTACCTGATGCTGCCAATGGGTCGCGCCAGCTGCGAGGCCGTGGCCC
AGGGGCTGGGCCTGAGCTTGCGGACCATGCAACGGCAACTCGACGAAGCCGGCGAATCGTTCACCGACATCCTGAGCGAG
GTGCGCCGCGATCTGGCGCAGCGGTACGTCGGCAATCCGGACTACTCCCTGCTACGCGTTTCGGAATTGCTCGGCTATGG
TTCAGCCAGTTCCTTCACGCGATGGTTTTCCACCCAGTTCGGGGAAGCCCCCCTGGCATGGCGCCGGCGCCACAGTGTCA
ACCGGTGA

Upstream 100 bases:

>100_bases
ATGCGCACGACTTTTGCCATCGCATCGTCTCCTGTTGTGTGTTGCCGCACGACGTGTGCCGCCATGTCAGCCAATCTAGA
TGCCCCGGCTGACTGCCGCT

Downstream 100 bases:

>100_bases
CTTGCACGGCACCATCGAATTCGCCTAGTCTGAGCGTGCGTCGCCACATCGGAGCTCCCATGGAAATGCCTAATGCAGTG
CTGCTGACCGTTGCCCTCAC

Product: Helix-turn-helix, AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQSLHPALHFMPTRPIIHAEYDAAWSRAPRARDARKTRWETSLRTLVRAAALTNFFEVAAAEGLNPQPLLRQAGLTRALL
TDPEQRVPVDACAVLLEAAADASSCLTFGLRMAESRQLSDFGLMSLLISQQPTLRDALDTIIRYRHLVNESVAIMVESAG
KVVMIRQEVVLGAPSRQATELALGVVFRLCRALLGAHWHPLSVNFTHAAPPDLQVHRRLFGCPLEFGSEFSGIVCLAADL
DAPNPTGDPAMARHAQRLVDTLPRVNEASIGREVRNAVYLMLPMGRASCEAVAQGLGLSLRTMQRQLDEAGESFTDILSE
VRRDLAQRYVGNPDYSLLRVSELLGYGSASSFTRWFSTQFGEAPLAWRRRHSVNR

Sequences:

>Translated_375_residues
MQSLHPALHFMPTRPIIHAEYDAAWSRAPRARDARKTRWETSLRTLVRAAALTNFFEVAAAEGLNPQPLLRQAGLTRALL
TDPEQRVPVDACAVLLEAAADASSCLTFGLRMAESRQLSDFGLMSLLISQQPTLRDALDTIIRYRHLVNESVAIMVESAG
KVVMIRQEVVLGAPSRQATELALGVVFRLCRALLGAHWHPLSVNFTHAAPPDLQVHRRLFGCPLEFGSEFSGIVCLAADL
DAPNPTGDPAMARHAQRLVDTLPRVNEASIGREVRNAVYLMLPMGRASCEAVAQGLGLSLRTMQRQLDEAGESFTDILSE
VRRDLAQRYVGNPDYSLLRVSELLGYGSASSFTRWFSTQFGEAPLAWRRRHSVNR
>Mature_375_residues
MQSLHPALHFMPTRPIIHAEYDAAWSRAPRARDARKTRWETSLRTLVRAAALTNFFEVAAAEGLNPQPLLRQAGLTRALL
TDPEQRVPVDACAVLLEAAADASSCLTFGLRMAESRQLSDFGLMSLLISQQPTLRDALDTIIRYRHLVNESVAIMVESAG
KVVMIRQEVVLGAPSRQATELALGVVFRLCRALLGAHWHPLSVNFTHAAPPDLQVHRRLFGCPLEFGSEFSGIVCLAADL
DAPNPTGDPAMARHAQRLVDTLPRVNEASIGREVRNAVYLMLPMGRASCEAVAQGLGLSLRTMQRQLDEAGESFTDILSE
VRRDLAQRYVGNPDYSLLRVSELLGYGSASSFTRWFSTQFGEAPLAWRRRHSVNR

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 41458; Mature: 41458

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLHPALHFMPTRPIIHAEYDAAWSRAPRARDARKTRWETSLRTLVRAAALTNFFEVAA
CCCCCCHHHHCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEGLNPQPLLRQAGLTRALLTDPEQRVPVDACAVLLEAAADASSCLTFGLRMAESRQLSD
HCCCCCHHHHHHHCCHHHHHCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
FGLMSLLISQQPTLRDALDTIIRYRHLVNESVAIMVESAGKVVMIRQEVVLGAPSRQATE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHCCCCHHHHH
LALGVVFRLCRALLGAHWHPLSVNFTHAAPPDLQVHRRLFGCPLEFGSEFSGIVCLAADL
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEEECC
DAPNPTGDPAMARHAQRLVDTLPRVNEASIGREVRNAVYLMLPMGRASCEAVAQGLGLSL
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHH
RTMQRQLDEAGESFTDILSEVRRDLAQRYVGNPDYSLLRVSELLGYGSASSFTRWFSTQF
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
GEAPLAWRRRHSVNR
CCCCHHHHHHHCCCC
>Mature Secondary Structure
MQSLHPALHFMPTRPIIHAEYDAAWSRAPRARDARKTRWETSLRTLVRAAALTNFFEVAA
CCCCCCHHHHCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEGLNPQPLLRQAGLTRALLTDPEQRVPVDACAVLLEAAADASSCLTFGLRMAESRQLSD
HCCCCCHHHHHHHCCHHHHHCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
FGLMSLLISQQPTLRDALDTIIRYRHLVNESVAIMVESAGKVVMIRQEVVLGAPSRQATE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHCCCCHHHHH
LALGVVFRLCRALLGAHWHPLSVNFTHAAPPDLQVHRRLFGCPLEFGSEFSGIVCLAADL
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEEECC
DAPNPTGDPAMARHAQRLVDTLPRVNEASIGREVRNAVYLMLPMGRASCEAVAQGLGLSL
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCHH
RTMQRQLDEAGESFTDILSEVRRDLAQRYVGNPDYSLLRVSELLGYGSASSFTRWFSTQF
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHC
GEAPLAWRRRHSVNR
CCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]