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The map label for this gene is flhC1 [H]

Identifier: 94310631

GI number: 94310631

Start: 1831581

End: 1832222

Strand: Direct

Name: flhC1 [H]

Synonym: Rmet_1691

Alternate gene names: 94310631

Gene position: 1831581-1832222 (Clockwise)

Preceding gene: 94310630

Following gene: 94310635

Centisome position: 46.63

GC content: 58.57

Gene sequence:

>642_bases
ATGACGACTCGAAAGAGTGTCCTTAGAGAAGTAGAGGAGTTCCGGCTGGCGGTTGAGCTGGTTGAACTCGGCGCGCGGTT
GCAGGTTTTGGAGTCCGAAGTCGCGATATCGCGGGACCGTCTTACCCGGCTCTACAAGGAGTTGCGAGGTGTCTCGCCGC
CGAAGGGGCAATTGCCGTCCTCGCCAGAGTGGTTCCTGACATGGCGACCGAATGTGCACGCATCGCTATTCCTGTCCGCC
TACAGGTTTCTGATGGCACAGGGCAAGCAATCGCGCATCCGCTGCATTGTTTCTGCCTATCGCCTGTACGTGGAGCACAT
CTCGCTGATAGGCGAGGATCTCACCTTGAGCTTTACACGAGCCTGGACCATGCTCAGGTTCCTGGACTCCGGTACGTTGG
TCAGCTCCACATGCAAATGCTGTGGTGGTTCGTTCGTCAGGCACAAGTATGACCTGCAGACCAACTTTGTCTGTGGATTG
TGCGCGCCGCCCCCACGCGCAGCCAAGGGGAAGAAGCTGGCTACGTCAGCGGAGCCCTTCGTTGTGCCAGAAGACTTGCA
GCAAACGATATCCATCGAACCCGCGGCGATGAATCGCCCGAAGGACGCCCCCCTCCGTCGGATGGGCAGTTTGAAGCCCT
GA

Upstream 100 bases:

>100_bases
TGCAAATGGGTCGCCGCAACACGATCTCCAGCAGATGCACATGGCTATTCTGCTCTCGGCGCACCCCTTGGACTCGATCA
ACTGACGATGCAGGAGGAAC

Downstream 100 bases:

>100_bases
GTTCTGCTTTACCCCCCCGGCAGTTTCACTTTTGGCGGCTATCTCTATAGACGAGGAGGCTTCGATTCTTCATGTCCAGA
CCCCAATAATCCATCCGCGA

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTTRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSPEWFLTWRPNVHASLFLSA
YRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGL
CAPPPRAAKGKKLATSAEPFVVPEDLQQTISIEPAAMNRPKDAPLRRMGSLKP

Sequences:

>Translated_213_residues
MTTRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSPEWFLTWRPNVHASLFLSA
YRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGL
CAPPPRAAKGKKLATSAEPFVVPEDLQQTISIEPAAMNRPKDAPLRRMGSLKP
>Mature_212_residues
TTRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPSSPEWFLTWRPNVHASLFLSAY
RFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTRAWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLC
APPPRAAKGKKLATSAEPFVVPEDLQQTISIEPAAMNRPKDAPLRRMGSLKP

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=186, Percent_Identity=47.3118279569892, Blast_Score=190, Evalue=6e-50,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 24001; Mature: 23870

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SPEWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTR
CCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPF
HHHHHHHHHCCCHHHHHHHHHCCHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC
VVPEDLQQTISIEPAAMNRPKDAPLRRMGSLKP
CCHHHHHHHHCCCCHHCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
TTRKSVLREVEEFRLAVELVELGARLQVLESEVAISRDRLTRLYKELRGVSPPKGQLPS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SPEWFLTWRPNVHASLFLSAYRFLMAQGKQSRIRCIVSAYRLYVEHISLIGEDLTLSFTR
CCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AWTMLRFLDSGTLVSSTCKCCGGSFVRHKYDLQTNFVCGLCAPPPRAAKGKKLATSAEPF
HHHHHHHHHCCCHHHHHHHHHCCHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC
VVPEDLQQTISIEPAAMNRPKDAPLRRMGSLKP
CCHHHHHHHHCCCCHHCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]