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The map label for this gene is cbbR1 [H]

Identifier: 94310444

GI number: 94310444

Start: 1621992

End: 1622873

Strand: Direct

Name: cbbR1 [H]

Synonym: Rmet_1502

Alternate gene names: 94310444

Gene position: 1621992-1622873 (Clockwise)

Preceding gene: 94310433

Following gene: 335055530

Centisome position: 41.29

GC content: 62.81

Gene sequence:

>882_bases
ATGCACTTGAGTCTGAGACAGATCCGTATCTTCGAAGCCGTCGCTCGGCACCGCTCCTACACGCGGGCGGCGGAAGAGTT
GCGCCTGACCCAGCCGGCGGTATTTACCCAGGCCAAGCAACTTGAGGAAGGCGTCGGGCACCCCCTTCTGGAGCGCATCG
GCAAGCAGATTTACCTCACCGATGCTGGCCGCGAGGTGCTCGCCACCTGCCGGGAAACGATCAAGGGGCTGGATTGCCTG
GAGATGCGCCTGGCTGACATGCAAGGGCTGAAGCGCGGGCGGCTTCGCCTCGCCATGGTAACCACCGCCGAATACCTGCT
GCCACGTCTCCTCGGGGAGTTCTGCGCCCACTACCCCGGAATCGAGGCGAAACTGATCGTCAGCAACCGGGAGCAATTGC
TGGCCCGCATCGCCAACAACGAGGATGACCTGACCATCCTCGGTGCTCCGCCCGAGGGCATGGACGTGGCGGCCATTCCC
ATCGCCGACAATCCCTTGGTCGTCATCGCGAGAAACGATCACCCCCTGGCCGGGGAGAAGGCAATTCCAATGGCACGTAT
CGCCGAGGAACCGTTCGTTTTTCGCGAACCCGGGTCCGGGACACGTCTCGCCACTGAACGGCATTTTGCCGAGCACGGCC
ACAAGCTCAAGGTCCGCCTGGAACTGGGCAGCAACGAGGCGATCAAGCAGGCCATCGCCGGCGGCTTGGGCGTGTCCGTG
CTCTCCGGCTACACGTTGGCGCTGGAAGGACTCAGCGGCTTGGTGCAACCTCTCGACGTGCAGGGGTTTCCTTTGATGCG
CAAATGGTACGTCGCCTATCCGAAGGGCAAGCACTTATCGGCGGTGGCCGAGGCGTTTCTTGGCCATTTGCTGGGCAAGT
AG

Upstream 100 bases:

>100_bases
AATCTCGCCCGATGAAATTCGGGCTGGTGCAAGTATGAGCAAGTTGCGCACTAATTAAAACTTAATTGATTTTATCTTTA
TCATTCACTATTATGAATTA

Downstream 100 bases:

>100_bases
AGGTCAGGAGCCTTTCTGAAAGCGGGGTATCCGGATGAGTGCGGTTGCTTAGCGGCGCCATGGGCTGCGAGGAATTTCCA
GGTGGAGAGATGATGGTGCG

Product: RuBisCO operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MHLSLRQIRIFEAVARHRSYTRAAEELRLTQPAVFTQAKQLEEGVGHPLLERIGKQIYLTDAGREVLATCRETIKGLDCL
EMRLADMQGLKRGRLRLAMVTTAEYLLPRLLGEFCAHYPGIEAKLIVSNREQLLARIANNEDDLTILGAPPEGMDVAAIP
IADNPLVVIARNDHPLAGEKAIPMARIAEEPFVFREPGSGTRLATERHFAEHGHKLKVRLELGSNEAIKQAIAGGLGVSV
LSGYTLALEGLSGLVQPLDVQGFPLMRKWYVAYPKGKHLSAVAEAFLGHLLGK

Sequences:

>Translated_293_residues
MHLSLRQIRIFEAVARHRSYTRAAEELRLTQPAVFTQAKQLEEGVGHPLLERIGKQIYLTDAGREVLATCRETIKGLDCL
EMRLADMQGLKRGRLRLAMVTTAEYLLPRLLGEFCAHYPGIEAKLIVSNREQLLARIANNEDDLTILGAPPEGMDVAAIP
IADNPLVVIARNDHPLAGEKAIPMARIAEEPFVFREPGSGTRLATERHFAEHGHKLKVRLELGSNEAIKQAIAGGLGVSV
LSGYTLALEGLSGLVQPLDVQGFPLMRKWYVAYPKGKHLSAVAEAFLGHLLGK
>Mature_293_residues
MHLSLRQIRIFEAVARHRSYTRAAEELRLTQPAVFTQAKQLEEGVGHPLLERIGKQIYLTDAGREVLATCRETIKGLDCL
EMRLADMQGLKRGRLRLAMVTTAEYLLPRLLGEFCAHYPGIEAKLIVSNREQLLARIANNEDDLTILGAPPEGMDVAAIP
IADNPLVVIARNDHPLAGEKAIPMARIAEEPFVFREPGSGTRLATERHFAEHGHKLKVRLELGSNEAIKQAIAGGLGVSV
LSGYTLALEGLSGLVQPLDVQGFPLMRKWYVAYPKGKHLSAVAEAFLGHLLGK

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=29.4520547945205, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=28.1879194630872, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI157672245, Length=292, Percent_Identity=30.8219178082192, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=28.3828382838284, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1790399, Length=241, Percent_Identity=27.8008298755187, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=27.1477663230241, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1788887, Length=273, Percent_Identity=29.3040293040293, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=26.2096774193548, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789204, Length=293, Percent_Identity=25.938566552901, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=146, Percent_Identity=32.1917808219178, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=24.4897959183673, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=26.1044176706827, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87081904, Length=219, Percent_Identity=27.3972602739726, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082132, Length=248, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=23.7837837837838, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=24.5967741935484, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32214; Mature: 32214

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSLRQIRIFEAVARHRSYTRAAEELRLTQPAVFTQAKQLEEGVGHPLLERIGKQIYLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEE
DAGREVLATCRETIKGLDCLEMRLADMQGLKRGRLRLAMVTTAEYLLPRLLGEFCAHYPG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCC
IEAKLIVSNREQLLARIANNEDDLTILGAPPEGMDVAAIPIADNPLVVIARNDHPLAGEK
CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCC
AIPMARIAEEPFVFREPGSGTRLATERHFAEHGHKLKVRLELGSNEAIKQAIAGGLGVSV
CCCHHHHCCCCEEEECCCCCCEEHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCHHHH
LSGYTLALEGLSGLVQPLDVQGFPLMRKWYVAYPKGKHLSAVAEAFLGHLLGK
HCCHHHHHHHHHHHCCCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHLSLRQIRIFEAVARHRSYTRAAEELRLTQPAVFTQAKQLEEGVGHPLLERIGKQIYLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCEEEEE
DAGREVLATCRETIKGLDCLEMRLADMQGLKRGRLRLAMVTTAEYLLPRLLGEFCAHYPG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCC
IEAKLIVSNREQLLARIANNEDDLTILGAPPEGMDVAAIPIADNPLVVIARNDHPLAGEK
CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCC
AIPMARIAEEPFVFREPGSGTRLATERHFAEHGHKLKVRLELGSNEAIKQAIAGGLGVSV
CCCHHHHCCCCEEEECCCCCCEEHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCCHHHH
LSGYTLALEGLSGLVQPLDVQGFPLMRKWYVAYPKGKHLSAVAEAFLGHLLGK
HCCHHHHHHHHHHHCCCCCCCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA