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The map label for this gene is cbbL [H]

Identifier: 94310443

GI number: 94310443

Start: 1620446

End: 1621867

Strand: Reverse

Name: cbbL [H]

Synonym: Rmet_1501

Alternate gene names: 94310443

Gene position: 1621867-1620446 (Counterclockwise)

Preceding gene: 94310448

Following gene: 94310442

Centisome position: 41.29

GC content: 65.26

Gene sequence:

>1422_bases
ATGGCCGCAAAGACATACAACGCTGGCGTGAAGGAGTATCGCCAAACCTACTGGACCCCGGAATACACTCCGAAGGACAC
TGACCTTCTCGCCTGCTTCAAGGTCACCCCGCAGCCGGGCGTGGCCCGCGAGGAAGTCGCCGCCGCCGTGGCCGCCGAGT
CGTCGACCGGCACCTGGACCACGGTGTGGACCGACCTGCTGACCGACCTCGACTACTACAAGGGCCGTGCCTACCGGATC
GAGGACGTGCCGGGAGATGACACCTGCTTCTACGCCTTCGTGGCCTATCCGATCGACCTGTTCGAAGAGGGTTCCATCGT
CAACGTGCTGACCTCCCTGGTTGGCAACGTCTTCGGCTTCAAGGCCCTGCGTGCCCTGCGCCTCGAGGACGTGCGCTTCC
CCATCGCCTACGTCATGACCTGCGGCGGCCCGCCGCACGGTATCCAGGTCGAGCGCGACATCATGAACAAATACGGCCGG
CCGCTGCTGGGCTGCACCATCAAGCCGAAGCTCGGCCTGTCGGCCAAGAACTACGGCCGCGCCGTCTATGAGTGCCTGCG
TGGCGGCCTCGACTTCACCAAGGACGACGAGAACGTCAACAGCCAGCCCTTCATGCGCTGGAAGCAGCGTTTCGACTTCG
TCCAGGAAGCGACCGAGAAGGCGCAGCGCGAAACCGGCGAACGCAAGGGCCACTACCTGAACGTCACCGCGCCGACGCCG
GAAGAGATGTACAAGCGCGCCGAGTACGCCAAGGAAATCGGCGCGCCGATCATCATGCACGACTACCTGACCGGCGGCTT
CTGCGCCAATACCGGCCTGGCCAACTGGTGCCGCGACAACGGCATGCTGCTGCACATCCACCGCGCCATGCACGCCGTGC
TCGACCGCAACCCGCACCACGGCATTCACTTCCGCGTGCTGACCAAGTGCCTGCGCCTGTCCGGCGGCGACCACCTGCAC
TCGGGCACCGTCGTCGGCAAGCTGGAAGGCGACCGCGACGCGACGCTCGGCTGGATCGACATCATGCGCGACGACTTCAT
CAAGGAAGACCGCAGCCGCGGCATCATGTTCGACCAGGACTTCGGCTCCATGCCCGGCGTCATGCCGGTCGCCTCCGGCG
GCATCCACGTCTGGCACATGCCTGCCTTGGTCACCATCTTCGGCGACGACTCGGTGCTGCAGTTCGGTGGCGGTACGCTC
GGCCACCCCTGGGGCAACGCCGCCGGCGCCGCCGCCAACCGCGTCGCGCTGGAAGCCTGCGTCGAGGCGCGCAACAAGGG
CGTCGCCGTCGAGAAGGAGGGCAAGAGCATCCTGACCGAGGCTGCCACGCACTCGCCCGAACTGAAGATCGCCATGGAAA
CGTGGAAAGAGATCAAGTTCGAGTTCGACACCGTCGACAAGCTGGACGTCGCCCACAAGTAA

Upstream 100 bases:

>100_bases
GATAAAATCAATTAAGTTTTAATTAGTGCGCAACTTGCTCATACTTGCACCAGCCCGAATTTCATCGGGCGAGATTTCCG
ACAACATAGAGGAGAAACGA

Downstream 100 bases:

>100_bases
TTCTTGCGCCGAGCGCATGACACCCCGGAGCCGCAATTGGCGACCCGGGATCAGGACCCAATTTGAAAGGAAATGAAATG
TCTGACGTAATGGATTACAA

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit 2 [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MAAKTYNAGVKEYRQTYWTPEYTPKDTDLLACFKVTPQPGVAREEVAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRI
EDVPGDDTCFYAFVAYPIDLFEEGSIVNVLTSLVGNVFGFKALRALRLEDVRFPIAYVMTCGGPPHGIQVERDIMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWKQRFDFVQEATEKAQRETGERKGHYLNVTAPTP
EEMYKRAEYAKEIGAPIIMHDYLTGGFCANTGLANWCRDNGMLLHIHRAMHAVLDRNPHHGIHFRVLTKCLRLSGGDHLH
SGTVVGKLEGDRDATLGWIDIMRDDFIKEDRSRGIMFDQDFGSMPGVMPVASGGIHVWHMPALVTIFGDDSVLQFGGGTL
GHPWGNAAGAAANRVALEACVEARNKGVAVEKEGKSILTEAATHSPELKIAMETWKEIKFEFDTVDKLDVAHK

Sequences:

>Translated_473_residues
MAAKTYNAGVKEYRQTYWTPEYTPKDTDLLACFKVTPQPGVAREEVAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRI
EDVPGDDTCFYAFVAYPIDLFEEGSIVNVLTSLVGNVFGFKALRALRLEDVRFPIAYVMTCGGPPHGIQVERDIMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWKQRFDFVQEATEKAQRETGERKGHYLNVTAPTP
EEMYKRAEYAKEIGAPIIMHDYLTGGFCANTGLANWCRDNGMLLHIHRAMHAVLDRNPHHGIHFRVLTKCLRLSGGDHLH
SGTVVGKLEGDRDATLGWIDIMRDDFIKEDRSRGIMFDQDFGSMPGVMPVASGGIHVWHMPALVTIFGDDSVLQFGGGTL
GHPWGNAAGAAANRVALEACVEARNKGVAVEKEGKSILTEAATHSPELKIAMETWKEIKFEFDTVDKLDVAHK
>Mature_472_residues
AAKTYNAGVKEYRQTYWTPEYTPKDTDLLACFKVTPQPGVAREEVAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRIE
DVPGDDTCFYAFVAYPIDLFEEGSIVNVLTSLVGNVFGFKALRALRLEDVRFPIAYVMTCGGPPHGIQVERDIMNKYGRP
LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWKQRFDFVQEATEKAQRETGERKGHYLNVTAPTPE
EMYKRAEYAKEIGAPIIMHDYLTGGFCANTGLANWCRDNGMLLHIHRAMHAVLDRNPHHGIHFRVLTKCLRLSGGDHLHS
GTVVGKLEGDRDATLGWIDIMRDDFIKEDRSRGIMFDQDFGSMPGVMPVASGGIHVWHMPALVTIFGDDSVLQFGGGTLG
HPWGNAAGAAANRVALEACVEARNKGVAVEKEGKSILTEAATHSPELKIAMETWKEIKFEFDTVDKLDVAHK

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 52608; Mature: 52477

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKTYNAGVKEYRQTYWTPEYTPKDTDLLACFKVTPQPGVAREEVAAAVAAESSTGTWT
CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHH
TVWTDLLTDLDYYKGRAYRIEDVPGDDTCFYAFVAYPIDLFEEGSIVNVLTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHH
KALRALRLEDVRFPIAYVMTCGGPPHGIQVERDIMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHHCCCCEEEEEECCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGGLDFTKDDENVNSQPFMRWKQRFDFVQEATEKAQRETGERKGHYLNVTAPTP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
EEMYKRAEYAKEIGAPIIMHDYLTGGFCANTGLANWCRDNGMLLHIHRAMHAVLDRNPHH
HHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCHHHHCCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKCLRLSGGDHLHSGTVVGKLEGDRDATLGWIDIMRDDFIKEDRSRGIMFDQD
CCHHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
FGSMPGVMPVASGGIHVWHMPALVTIFGDDSVLQFGGGTLGHPWGNAAGAAANRVALEAC
CCCCCCCCEECCCCEEEEEECEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
VEARNKGVAVEKEGKSILTEAATHSPELKIAMETWKEIKFEFDTVDKLDVAHK
HHHHHCCCEEECCCHHHHHHHHCCCCCEEEHHHHHHHHEEECCCCCCCCCCCC
>Mature Secondary Structure 
AAKTYNAGVKEYRQTYWTPEYTPKDTDLLACFKVTPQPGVAREEVAAAVAAESSTGTWT
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHH
TVWTDLLTDLDYYKGRAYRIEDVPGDDTCFYAFVAYPIDLFEEGSIVNVLTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHH
KALRALRLEDVRFPIAYVMTCGGPPHGIQVERDIMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHHCCCCEEEEEECCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGGLDFTKDDENVNSQPFMRWKQRFDFVQEATEKAQRETGERKGHYLNVTAPTP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
EEMYKRAEYAKEIGAPIIMHDYLTGGFCANTGLANWCRDNGMLLHIHRAMHAVLDRNPHH
HHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCHHHHCCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKCLRLSGGDHLHSGTVVGKLEGDRDATLGWIDIMRDDFIKEDRSRGIMFDQD
CCHHHHHHHHHHCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC
FGSMPGVMPVASGGIHVWHMPALVTIFGDDSVLQFGGGTLGHPWGNAAGAAANRVALEAC
CCCCCCCCEECCCCEEEEEECEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
VEARNKGVAVEKEGKSILTEAATHSPELKIAMETWKEIKFEFDTVDKLDVAHK
HHHHHCCCEEECCCHHHHHHHHCCCCCEEEHHHHHHHHEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA