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The map label for this gene is yjjV [H]

Identifier: 94310411

GI number: 94310411

Start: 1588375

End: 1589124

Strand: Reverse

Name: yjjV [H]

Synonym: Rmet_1469

Alternate gene names: 94310411

Gene position: 1589124-1588375 (Counterclockwise)

Preceding gene: 94310412

Following gene: 94310410

Centisome position: 40.46

GC content: 59.6

Gene sequence:

>750_bases
ATGATCGCCACAGCAGGCCTCGTGGACTTCCACTGCCATCTTGATCTCTACCCGAACCATGCTGCGGCAGTCCAGGACGC
GGAGGCCTCTGGCGTGTTCACGCTGGCGGTGACGACGACACCTCGCGCCTGGCCTCGCAATCACGAACTCGCGCAGCGCA
CAAAGCATGTTCGAGCGGCTCTGGGACTGCATCCGCAGTTGGTCGCAGAACGCGAGAACGAGATCGAGCTATGGGATCAA
CACCTTGCGGAGACGCGCTATGTCGGCGAAGTCGGGTTGGACGCCGGCCCCCGGTTCTTCAAATCGCTCGATGCGCAGAA
GCGTGTGTTCCAACACGTGTTGCAGCGTTGCGCGCAGGCCGGTGACAAGATCATTACGGTTCACAGCATCAGGTCGGCCA
AGGCGGTACTCGATCTTGTCGAAGCACATCTACCGCCCGAGCGCGGGAAAATCGTTCTCCACTGGTTCACGGGAACAAAG
AGCGAGGCGAAGCGTGCGTTGGAATTGGGCTGCTACTTCTCGATCAACGCGGCAATGCTGGGCAATGAGAGGCACGCACC
GATGGTGCAGGCTATCCCCTTGGATCGGATGCTGACGGAAACTGATGGTCCCTTCACTCGCACTGGCGACAGGCCCTCGC
AGCCGACGGATGTAGTAAGCGTCGTCGAGGAACTGGGCTGTTTACATCGGCTACCTGCAAACGACATGGCCAGCCTTATT
CGTGACAACCTACGAGCATTGCTCGGATAG

Upstream 100 bases:

>100_bases
CACCTAGACCAACTCGCCGATGTCTACCGGCGCGGCCTCGATGAGGTTGCACGGCTCATCGACGGTGCCGAAGCGAGACC
GAGTTGACGAGGGTGAGTAC

Downstream 100 bases:

>100_bases
CTGGAGACGAAACGCTCCGCGCGAACTCTACATCCGCTTGAGTGTTCCCCAGTTCGCCCTAGCAAGTTGTCCCGATAGCT
GCGGAACTTCACCATGTCTC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIATAGLVDFHCHLDLYPNHAAAVQDAEASGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERENEIELWDQ
HLAETRYVGEVGLDAGPRFFKSLDAQKRVFQHVLQRCAQAGDKIITVHSIRSAKAVLDLVEAHLPPERGKIVLHWFTGTK
SEAKRALELGCYFSINAAMLGNERHAPMVQAIPLDRMLTETDGPFTRTGDRPSQPTDVVSVVEELGCLHRLPANDMASLI
RDNLRALLG

Sequences:

>Translated_249_residues
MIATAGLVDFHCHLDLYPNHAAAVQDAEASGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERENEIELWDQ
HLAETRYVGEVGLDAGPRFFKSLDAQKRVFQHVLQRCAQAGDKIITVHSIRSAKAVLDLVEAHLPPERGKIVLHWFTGTK
SEAKRALELGCYFSINAAMLGNERHAPMVQAIPLDRMLTETDGPFTRTGDRPSQPTDVVSVVEELGCLHRLPANDMASLI
RDNLRALLG
>Mature_249_residues
MIATAGLVDFHCHLDLYPNHAAAVQDAEASGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERENEIELWDQ
HLAETRYVGEVGLDAGPRFFKSLDAQKRVFQHVLQRCAQAGDKIITVHSIRSAKAVLDLVEAHLPPERGKIVLHWFTGTK
SEAKRALELGCYFSINAAMLGNERHAPMVQAIPLDRMLTETDGPFTRTGDRPSQPTDVVSVVEELGCLHRLPANDMASLI
RDNLRALLG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=266, Percent_Identity=27.8195488721804, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=27.734375, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71980746, Length=225, Percent_Identity=27.1111111111111, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221330018, Length=176, Percent_Identity=30.6818181818182, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24586117, Length=176, Percent_Identity=30.6818181818182, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 27580; Mature: 27580

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATAGLVDFHCHLDLYPNHAAAVQDAEASGVFTLAVTTTPRAWPRNHELAQRTKHVRAA
CCCCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
LGLHPQLVAERENEIELWDQHLAETRYVGEVGLDAGPRFFKSLDAQKRVFQHVLQRCAQA
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GDKIITVHSIRSAKAVLDLVEAHLPPERGKIVLHWFTGTKSEAKRALELGCYFSINAAML
CCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCEEEECHHEE
GNERHAPMVQAIPLDRMLTETDGPFTRTGDRPSQPTDVVSVVEELGCLHRLPANDMASLI
CCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
RDNLRALLG
HHHHHHHCC
>Mature Secondary Structure
MIATAGLVDFHCHLDLYPNHAAAVQDAEASGVFTLAVTTTPRAWPRNHELAQRTKHVRAA
CCCCCCEEEEEEEEEECCCCHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
LGLHPQLVAERENEIELWDQHLAETRYVGEVGLDAGPRFFKSLDAQKRVFQHVLQRCAQA
HCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GDKIITVHSIRSAKAVLDLVEAHLPPERGKIVLHWFTGTKSEAKRALELGCYFSINAAML
CCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCEEEECHHEE
GNERHAPMVQAIPLDRMLTETDGPFTRTGDRPSQPTDVVSVVEELGCLHRLPANDMASLI
CCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
RDNLRALLG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]