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The map label for this gene is tsf [H]

Identifier: 94310378

GI number: 94310378

Start: 1557231

End: 1558109

Strand: Direct

Name: tsf [H]

Synonym: Rmet_1436

Alternate gene names: 94310378

Gene position: 1557231-1558109 (Clockwise)

Preceding gene: 94310377

Following gene: 94310379

Centisome position: 39.64

GC content: 61.66

Gene sequence:

>879_bases
ATGGCGGCAATTACCGCAAGCATGGTTGCAGAACTGCGCGCGAAGACCGACGCGCCGATGATGGAATGCAAGAAGGCCCT
GACGGAAGCCGACGGCGATCTGGGCAAGGCTGAAGAACTGCTGCGCGTCAAGCTGGGCAACAAGGCCAGCAAGGCTGCTT
CGCGCGTGACCGCAGAAGGCATCGTGGTTTCGTACATCGACGGCACCACGGGCGCGCTGGTCGAACTGAACTGCGAAACC
GACTTCGTGTCGAAGAACGACGACTTCCTGGGCTTCGGTGCCAAGGTTGCCGAACTGGTAGCCAAGCAGAACCCGGCCGA
TGTGGCTGTTCTGTCGGCGCTGGAGATGGACGGTTCGACCGTCGACGCCGTGCGCTCGGCCCTGATCGGCAAGATCGGCG
AGAACATGACGATCCGCCGCTTCGTGCGTTACACCAACGGTGGCAAGCTGGTTTCGTACCTGCACGGCACCCGTATTGGC
GTGATGGTTGAGTTCGATGGCGACGAAGCCGCCGCCAAGGACGTCGCCATGCACGTGGCCGCCATGAAGCCGGTGTCGCT
GTCGGCTGACCAGGTGCCCGCCGAGCTGATCGCCAAGGAGCGCAGCATCGCCGAGCAAAAGGCTGCCGAATCGGGCAAGC
CGGCCGAGATCGTCGCCAAGATGGTGGAAGGTTCGGTCCAGAAGTACCTGAAGGAAGTTTCGCTGCTGAACCAGTCGTTC
GTGAAGAACGACAAGCAGACCGTGGAACAGATGCTGAAGGGCGTCAACACGACCGTGAAGGGTTTCACGCTGTACGTGGT
TGGCGAAGGCATCGAGAAGAAGCAGGACGATTTCGCTGCTGAAGTGGCTGCCCAGGTGGCCGCCGCCCAGAAGGCCTGA

Upstream 100 bases:

>100_bases
ATTCGCCGCGGGTGAAGCCGGACTGAAGTGGATCTGATCCCGGCCGGCTGCCACGCGCGACGTGCTGGGCAGCCGGCCCG
AACCAATCAAGGAGTGACAA

Downstream 100 bases:

>100_bases
TGTCCTGGTGGCTGGGCGGATTTCCCCCTTGAGGGGTGACCACCTGGCCACCGTATAATGCAGAGGGGCGCCGAAAGGTG
CCCCTCTGCACAAGTGCGGC

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MAAITASMVAELRAKTDAPMMECKKALTEADGDLGKAEELLRVKLGNKASKAASRVTAEGIVVSYIDGTTGALVELNCET
DFVSKNDDFLGFGAKVAELVAKQNPADVAVLSALEMDGSTVDAVRSALIGKIGENMTIRRFVRYTNGGKLVSYLHGTRIG
VMVEFDGDEAAAKDVAMHVAAMKPVSLSADQVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQSF
VKNDKQTVEQMLKGVNTTVKGFTLYVVGEGIEKKQDDFAAEVAAQVAAAQKA

Sequences:

>Translated_292_residues
MAAITASMVAELRAKTDAPMMECKKALTEADGDLGKAEELLRVKLGNKASKAASRVTAEGIVVSYIDGTTGALVELNCET
DFVSKNDDFLGFGAKVAELVAKQNPADVAVLSALEMDGSTVDAVRSALIGKIGENMTIRRFVRYTNGGKLVSYLHGTRIG
VMVEFDGDEAAAKDVAMHVAAMKPVSLSADQVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQSF
VKNDKQTVEQMLKGVNTTVKGFTLYVVGEGIEKKQDDFAAEVAAQVAAAQKA
>Mature_291_residues
AAITASMVAELRAKTDAPMMECKKALTEADGDLGKAEELLRVKLGNKASKAASRVTAEGIVVSYIDGTTGALVELNCETD
FVSKNDDFLGFGAKVAELVAKQNPADVAVLSALEMDGSTVDAVRSALIGKIGENMTIRRFVRYTNGGKLVSYLHGTRIGV
MVEFDGDEAAAKDVAMHVAAMKPVSLSADQVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQSFV
KNDKQTVEQMLKGVNTTVKGFTLYVVGEGIEKKQDDFAAEVAAQVAAAQKA

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome [H]

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family [H]

Homologues:

Organism=Homo sapiens, GI171846268, Length=235, Percent_Identity=31.063829787234, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI291084500, Length=256, Percent_Identity=29.6875, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI291084498, Length=92, Percent_Identity=41.304347826087, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI291084502, Length=92, Percent_Identity=41.304347826087, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1786366, Length=285, Percent_Identity=48.7719298245614, Blast_Score=229, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17561440, Length=292, Percent_Identity=28.4246575342466, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921466, Length=286, Percent_Identity=31.4685314685315, Blast_Score=98, Evalue=7e-21,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449 [H]

Pfam domain/function: PF00889 EF_TS; PF00627 UBA [H]

EC number: NA

Molecular weight: Translated: 30949; Mature: 30818

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAITASMVAELRAKTDAPMMECKKALTEADGDLGKAEELLRVKLGNKASKAASRVTAEG
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCC
IVVSYIDGTTGALVELNCETDFVSKNDDFLGFGAKVAELVAKQNPADVAVLSALEMDGST
EEEEEECCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHHHCCCCH
VDAVRSALIGKIGENMTIRRFVRYTNGGKLVSYLHGTRIGVMVEFDGDEAAAKDVAMHVA
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
AMKPVSLSADQVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQSF
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKNDKQTVEQMLKGVNTTVKGFTLYVVGEGIEKKQDDFAAEVAAQVAAAQKA
HCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAITASMVAELRAKTDAPMMECKKALTEADGDLGKAEELLRVKLGNKASKAASRVTAEG
CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCC
IVVSYIDGTTGALVELNCETDFVSKNDDFLGFGAKVAELVAKQNPADVAVLSALEMDGST
EEEEEECCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHHHCCCCH
VDAVRSALIGKIGENMTIRRFVRYTNGGKLVSYLHGTRIGVMVEFDGDEAAAKDVAMHVA
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
AMKPVSLSADQVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQSF
HCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKNDKQTVEQMLKGVNTTVKGFTLYVVGEGIEKKQDDFAAEVAAQVAAAQKA
HCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA