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The map label for this gene is trbF [H]

Identifier: 94310290

GI number: 94310290

Start: 1457397

End: 1458101

Strand: Direct

Name: trbF [H]

Synonym: Rmet_1348

Alternate gene names: 94310290

Gene position: 1457397-1458101 (Clockwise)

Preceding gene: 94310289

Following gene: 94310291

Centisome position: 37.1

GC content: 67.94

Gene sequence:

>705_bases
ATGCGATTCAGAAAACCGCAGGTGCGCTATGCCGACACGCCGCAGCCTGCCACGCCGTACCAAGCTGCCGGCCAGGTGTG
GGACGACCGTATCGGCTCGCCGCGCGTGCAGGCGAAGAACTGGCGCCTGATGGCCTTCGGCTGTCTGACGCTCGCGCTGT
TGATGGCCGGCGGCCTGGTGTGGCGCTCGGCGCAGTCCTTCGTGACGCCCTACGTCGTGGAGGTGGACAACGCGGGCCAG
GTGCGCGCCGTGGGCGAAGCCGCCACGCCGTACCGGCCCAACGATGCACAGACGGCGCACCACATCGCGCGCTTCGTGAC
GCTGGTGCGCTCGCTGTCCATCGACCCCATCGTCGTCCGCCAGAACTGGCTGGACGCCTACGATTACACGACCGACAAGG
GCGCGGCCGTGCTCAACGACTACGCGCGAGTCAACGACCCGTTCGCGCGCATCGGCAAGGAGTCGGTGACGGTGCAGATC
ACCAGCGTCGTGCGCGCCAGCGACACGTCTTTCAACGTGCGCTGGACGGAACGCCGCTACGTCAACGGCGCCGCGGCGGG
CCTGGAGCGGTGGACGGCCGTGGTGTCCATCGTGCTCCAGCCGCCGCGCACCGAAGAACGCCTGCGCAAGAACCCCCTGG
GCATCTACGTCAACGGCCTGTCGTGGAGCCGCGAACTGGATTCTTCCGAAGGAGCCAAGCCATGA

Upstream 100 bases:

>100_bases
CGCCGCGCACACGCTGCGCGGCGGTGACGGTGGCGGCTCGGGGCAAGGCCCGAGCCTGCGCGGCTCCGACGAGTAAAGCG
ATTCACAAGGAGAACTGACC

Downstream 100 bases:

>100_bases
ATGATCTTTTCCGTAAATCCGCTTTGCCGGTGATCCTGCTTGCCCTCGTGGGCTGCGCCTCGCAGGGCAAGCCACCGCCG
ACCATCTCGCTCGATGAGCC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRFRKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLVWRSAQSFVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP

Sequences:

>Translated_234_residues
MRFRKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLVWRSAQSFVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP
>Mature_234_residues
MRFRKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLVWRSAQSFVTPYVVEVDNAGQ
VRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQI
TSVVRASDTSFNVRWTERRYVNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26121; Mature: 26121

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEEHHHHHHHHHHHHCCHH
WRSAQSFVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVR
HHCHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDTSFNVRWTERRY
CCCCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCEEEEEECCHHH
VNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP
CCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFRKPQVRYADTPQPATPYQAAGQVWDDRIGSPRVQAKNWRLMAFGCLTLALLMAGGLV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCEEEEHHHHHHHHHHHHCCHH
WRSAQSFVTPYVVEVDNAGQVRAVGEAATPYRPNDAQTAHHIARFVTLVRSLSIDPIVVR
HHCHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYARVNDPFARIGKESVTVQITSVVRASDTSFNVRWTERRY
CCCCCHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCEEEEEECCHHH
VNGAAAGLERWTAVVSIVLQPPRTEERLRKNPLGIYVNGLSWSRELDSSEGAKP
CCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]