| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is trbE [H]
Identifier: 94310286
GI number: 94310286
Start: 1452470
End: 1454929
Strand: Direct
Name: trbE [H]
Synonym: Rmet_1344
Alternate gene names: 94310286
Gene position: 1452470-1454929 (Clockwise)
Preceding gene: 94310285
Following gene: 94310287
Centisome position: 36.98
GC content: 66.18
Gene sequence:
>2460_bases ATGCTGAACCTTGCCGAATACCGCCAGCGACCCGCATTGCTCGCCGACTGGCTGCCGTGGGCTGGATTGGTTGCGCCGGG CGTCGTCTTGAACAAGGACGGCAGTTTCCAGCGCACGGCCCGGTTTCGCGGGCCTGACCTCGACAGCGCGACGCAAGGCG AGTTGATCGCCACGTCGGCACGCCTGAACAACGCCCTGCGCCGCATGGGTTCGGGCTGGGCGCTGTTCATTGAAGCAGAG CGCCGACCCGCCGCCGACTATCCGCACTCGGAGTTTCCCGAGCCACTGTCGTGGCTGGTGGACGAGGAACGCCGCGCCAC CTTCGAGGACTCGGGCAACCACTTCGAGAGCGGCTATCACCTGACGCTGGTGTACCTGCCGCCCGAGGAATCGCGCGCCC GTGCCGCCAAGATGCTCTACGAGAACACGCCGACGAATGGCGTGGACTGGCGCGAGCGCCTGCAAGCCTTCGTCGCGGAG ACGGATCGCGTCTTTGACCTGCTCGATGGCGTGATGCCGGAAATCACCTGGCTCGATGACAGCCAGACGCTGACCTACCT ACACGCCACCATCTCGACGCGGCGCTATCGCGTCGGCGTGCCCGAAGTGCCGTTCCACATCGACGCGCTGCTGACCGATT CCGCGCTGGTCGGTGGCCTGGCACCGATGCTGGGCGACCAGCACCTGCGCGTGGTGTCGGTGCGGGGCTTCCCGACCTCG ACCTGGCCGGGGATTCTGGACGACCTCAACCGCCTCGGCTTTGCCTACCGCTGGAGCACGCGCTTCCTGTGCCTCGACAA AGCCGAGGCGGAACGGGAGTTGGGGCGCCTGCGCCGCCAGTGGTTCGCCAAGCGCAAGAACGTCATCGCGCTGCTGCGCG AAACGATCTTCCAGCAAGAAAGCCCGCTGGTGGATACCGACGCCAGCAACAAGGCGGCGGATGCAGACGCGGCCTTGCAG GAGCTGGGCAGCGATCAAGTCGCCTTCGGCTACCTCACCGCGACGGTGACGGTGCTCGATGCCGACCCGGCCGTGGCCGA CGAGAAGCTGCGCATGGTTGAGCGCGTCATTCAGGGACGCGGCTTCATCACCATCCCGGAAACGCTCAACGCCGTGGATG CGTGGCTGTCGTCCATTCCGGGCAACGCCTACGCCAACGTGCGGCAGCCCATCGTCTCGACGCTGAACCTGGCTCACATG ATGCCGGTGTCGGCGGTATGGGCCGGGCCGGAAAAGGACGAGCACCTGGACGGCCCGCCGCTGATCGTCACGCGCACCGA TGGCGCCACGCCTTTTCGCTTGGTCACTCACATCGGCGACGTGGGCCACACGCTGGTCGCGGGGCCGACCGGCATGGGCA AGTCGGTTTTGCTCGCCACGCTGGCAATGCAGTTCCGCCGCTATCGCGGCTCGCGCATCTTCGCGTTCGACATGGGCCGC TCGATGCGCGCCACGGTTCTCGGGCTGGGCGGCGAGCACTACGACCTCGGGACGGACGGCGAAATCGCCTTCCAGCCCTT GGCACACATCGACCGCGAGGGCTACCGCACCTGGGCGGCCGAATGGATCGAAGGCCGCTTGCTGCATGAAGGCGTGGCGG TCGGTCCCGACGAGAAAGCGGCTATCTGGTCGGCGCTGGGAAGCCTCGCCGGTGCGCCGTTGGAGCAGCGCACGATGACG GGGCTTTCCGTGCTGCTGCAATCGAACACGCTGCGTCAGGCGCTGTCGCCCTATGTGCTCGGCGGTGCCCACGGCAAGCT GCTGGACGCCGACCATGACCGGCTAGGCATGGCCGACGTGCAGTGCTTCGAGATGGAGGAACTGATGCACAACAAGGCCG CCGTCATGGCCGTGCTGCATTACCTCTTTGCGCGCTTCGATGAACGCTTCGACGGTGCGCCCACGCTGCTGATCCTCGAT GAAGCGTGGCTGTTCCTCGATGACCCGGTGTTTGCCGCGCGTATCCGGCAATGGCTCAAGACGCTCAGGAAAAAGAACGT CAGTGTCATCTTCGCCACGCAATCGCTGGCGGACATCAAGGATTCGAGCATCGCACCCGCGATCATCGAGAGCTGCGCAA GCCGCATCTTCCTGCCGAACCCGCAGGCGACCGAGCCGCAGATTCGTACGATCTACGAGGGCTTCGGCCTGAACTCACGG CAGATCGAAATCGTCGCCACCGCGCAGCCCAAGCGCGACTACTACTACCAATCCCGCTTCGGCAACCGCCTATTCGACCT CGACCTGGGGCCGGCGACGCTGGCCTTTGCGGGCGCTTCCACGCCGCAAGACCAGCGCGACATGGACCGCGTGCTGCTGG ACGCCGGCACGCCCGGCTTCGCAGGCGGCTGGCTGCGCCATTGCGGCCTCGATTGGGCGGCCGATCTGCTGCCCTCGTTC CCCGGCCTCGCGCCGGGTTCCCTCCGTACCGCTGACCACCTATTGGAGAACCAGCTATGA
Upstream 100 bases:
>100_bases GCTGGCGGTATGGGGCGCGCGCGTCGATCCGCAGTTCATGGCCGTGTTCGCCCGGCACATCAAGCACCGCCCGCTGCTGG ACGTGTGAGGGGACGCCGCC
Downstream 100 bases:
>100_bases AGATCCGTGCGCTTTCCATTTCTCTCGCCGCCGCGCTGTCGGTATCGCTGCTGGCCGTACAACCGGCATCTGCCATCACG GTGTTCGATCCGTCCAACTT
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRMGSGWALFIEAE RRPAADYPHSEFPEPLSWLVDEERRATFEDSGNHFESGYHLTLVYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEITWLDDSQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSALVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELGRLRRQWFAKRKNVIALLRETIFQQESPLVDTDASNKAADADAALQ ELGSDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFITIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKDEHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGR SMRATVLGLGGEHYDLGTDGEIAFQPLAHIDREGYRTWAAEWIEGRLLHEGVAVGPDEKAAIWSALGSLAGAPLEQRTMT GLSVLLQSNTLRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHNKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRFGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGTPGFAGGWLRHCGLDWAADLLPSF PGLAPGSLRTADHLLENQL
Sequences:
>Translated_819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRMGSGWALFIEAE RRPAADYPHSEFPEPLSWLVDEERRATFEDSGNHFESGYHLTLVYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEITWLDDSQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSALVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELGRLRRQWFAKRKNVIALLRETIFQQESPLVDTDASNKAADADAALQ ELGSDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFITIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKDEHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGR SMRATVLGLGGEHYDLGTDGEIAFQPLAHIDREGYRTWAAEWIEGRLLHEGVAVGPDEKAAIWSALGSLAGAPLEQRTMT GLSVLLQSNTLRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHNKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRFGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGTPGFAGGWLRHCGLDWAADLLPSF PGLAPGSLRTADHLLENQL >Mature_819_residues MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRMGSGWALFIEAE RRPAADYPHSEFPEPLSWLVDEERRATFEDSGNHFESGYHLTLVYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAE TDRVFDLLDGVMPEITWLDDSQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSALVGGLAPMLGDQHLRVVSVRGFPTS TWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELGRLRRQWFAKRKNVIALLRETIFQQESPLVDTDASNKAADADAALQ ELGSDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGRGFITIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPVSAVWAGPEKDEHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGR SMRATVLGLGGEHYDLGTDGEIAFQPLAHIDREGYRTWAAEWIEGRLLHEGVAVGPDEKAAIWSALGSLAGAPLEQRTMT GLSVLLQSNTLRQALSPYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHNKAAVMAVLHYLFARFDERFDGAPTLLILD EAWLFLDDPVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRFGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGTPGFAGGWLRHCGLDWAADLLPSF PGLAPGSLRTADHLLENQL
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 90724; Mature: 90724
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRMGSGWALFIEAERRPAADYPHSEFPEPLSWLVDEERRATFEDSGNHFESGYH HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCEECCCEE LTLVYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAETDRVFDLLDGVMPEITWLDD EEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC SQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSALVGGLAPMLGDQHLRVVSVRGFPTS CCEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC TWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELGRLRRQWFAKRKNVIALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAALQELGSDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC GFITIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPVSAVWAGPEKDEHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SMRATVLGLGGEHYDLGTDGEIAFQPLAHIDREGYRTWAAEWIEGRLLHEGVAVGPDEKA CCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHH AIWSALGSLAGAPLEQRTMTGLSVLLQSNTLRQALSPYVLGGAHGKLLDADHDRLGMADV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHH QCFEMEELMHNKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRFGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGTPGF EEEEEEECCCCHHHHHHHHHCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHCCCCCCC AGGWLRHCGLDWAADLLPSFPGLAPGSLRTADHLLENQL CCHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRMGSGWALFIEAERRPAADYPHSEFPEPLSWLVDEERRATFEDSGNHFESGYH HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCCEECCCEE LTLVYLPPEESRARAAKMLYENTPTNGVDWRERLQAFVAETDRVFDLLDGVMPEITWLDD EEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC SQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSALVGGLAPMLGDQHLRVVSVRGFPTS CCEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC TWPGILDDLNRLGFAYRWSTRFLCLDKAEAERELGRLRRQWFAKRKNVIALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAALQELGSDQVAFGYLTATVTVLDADPAVADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC GFITIPETLNAVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPVSAVWAGPEKDEHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SMRATVLGLGGEHYDLGTDGEIAFQPLAHIDREGYRTWAAEWIEGRLLHEGVAVGPDEKA CCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHH AIWSALGSLAGAPLEQRTMTGLSVLLQSNTLRQALSPYVLGGAHGKLLDADHDRLGMADV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHH QCFEMEELMHNKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDDPVFAARIRQWLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRFGNRLFDLDLGPATLAFAGASTPQDQRDMDRVLLDAGTPGF EEEEEEECCCCHHHHHHHHHCCEEEEECCCCHHEEECCCCCCCHHHHHHHHHHCCCCCCC AGGWLRHCGLDWAADLLPSFPGLAPGSLRTADHLLENQL CCHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]