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The map label for this gene is ybhR [H]

Identifier: 94310212

GI number: 94310212

Start: 1390659

End: 1391777

Strand: Reverse

Name: ybhR [H]

Synonym: Rmet_1268

Alternate gene names: 94310212

Gene position: 1391777-1390659 (Counterclockwise)

Preceding gene: 94310213

Following gene: 94310211

Centisome position: 35.43

GC content: 64.61

Gene sequence:

>1119_bases
GTGTTGAGCTCCGCATTTTCATTCACCCGCCTGCGCGCCCAGTTCATCAAGGAAGTGCTCAGCGTCCTGCGCGACCCGCG
CAGCCGCATGGTGGTGTTCGTGCCGCCGATCCTGCAGTTGCTGGTGTTCGCCTTTGCCGCGACGCTGGAAGTGCGCAACG
TCGATATCGCCGTCTACGACCAGGATGCGGGGCGCTGGTCGCACGAGCTGGTACAGCGCCTGGACAGTGCCCGCTTCATC
ACCCACATCCGGCATGTCGACAGCCAGCAGCAGCTGCACGAGCTGATCGACCGTGGCGAGGTGATCGCCGCGCTCGCCAT
CCCGGTGGATTTCTCGCGCTCCATCGCCGCCGGCGAAAGTGGCCGCGCGCAGGTACTGGTCGATGGCCGGCGCAGCAACT
CCGGGCAGATCACCGTGGCCTATCTGTCCACCATCGCCGCCGATGTCGGCGCCGAGGTCGTGCCCGACGCCCAGGCACCA
ACGCCCGTGGTCGTGCGCCACTGGTTCAACCCGAATCTGGTCTACCGCTGGTTCATCGTGCCCGGGCTGACGGGCATCCT
GGCGCTGTTCAGCGCGCTGCTCATCACCTCGCTGTCGATTGCACGCGAACGTGAACTCGGCACCTTCGACCAGTTGCTGG
TGTCGCCCACCTCGACGCCCGAAATCATCATTTCAAAGTCACTGCCGGCACTCGCAATTGGCACCGCGCTGGGCCTGTTC
ATGATCAGCGCGGGCGTATTCCTGTTCGGCATCCCGTTTACGGGCTCGTTTGCGCTCCTGCTCGCCAGTCTGGTGCTGTT
CATCCTGTCGGTGGTCGGCATCGGTCTGATGATTTCCGCGGTCAGCATGACGCAGCAGCAGGCCATCCTGGGGGCGTTCG
CCATCGGCGTGCCGGCGGTGCTGATGTCCGGCTTTGCGACGCCTGTGGAAAACATGCCCGTCGTCCTGCAATGGCTGGCC
CAGGCCATTCCGCTGACCCACTTCCTCATCATCGTCGAAGGCAGCTTTCTCAAGGCCATGCCGCCCGGTGACATTCTCGC
CAGCCTGTGGCCGCTGGCGGTCATCGCCCTGGCCACGCTGACGATGGCCACCGTATTCGTCCGAGGACGCCTGCAATGA

Upstream 100 bases:

>100_bases
TGGGCGGTGTTCCTGCCCAACCTGGCGGCCATGGCGGCGATCGGGGTGCTGTTCTTCGTGATCGCCAAGCGCGCCACGCG
CAAGAACCTGGAGTAAGGCC

Downstream 100 bases:

>100_bases
AATCCAAGCCCCGCACTCCCTTTCTTCGCGCAACCGTCACCGGCCTGACCCCTGGGCGCGCGCGTCCGCTCGCGCTGGCC
CTGTCCTGCGTGCTGCTGAC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MLSSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFAFAATLEVRNVDIAVYDQDAGRWSHELVQRLDSARFI
THIRHVDSQQQLHELIDRGEVIAALAIPVDFSRSIAAGESGRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAP
TPVVVRHWFNPNLVYRWFIVPGLTGILALFSALLITSLSIARERELGTFDQLLVSPTSTPEIIISKSLPALAIGTALGLF
MISAGVFLFGIPFTGSFALLLASLVLFILSVVGIGLMISAVSMTQQQAILGAFAIGVPAVLMSGFATPVENMPVVLQWLA
QAIPLTHFLIIVEGSFLKAMPPGDILASLWPLAVIALATLTMATVFVRGRLQ

Sequences:

>Translated_372_residues
MLSSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFAFAATLEVRNVDIAVYDQDAGRWSHELVQRLDSARFI
THIRHVDSQQQLHELIDRGEVIAALAIPVDFSRSIAAGESGRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAP
TPVVVRHWFNPNLVYRWFIVPGLTGILALFSALLITSLSIARERELGTFDQLLVSPTSTPEIIISKSLPALAIGTALGLF
MISAGVFLFGIPFTGSFALLLASLVLFILSVVGIGLMISAVSMTQQQAILGAFAIGVPAVLMSGFATPVENMPVVLQWLA
QAIPLTHFLIIVEGSFLKAMPPGDILASLWPLAVIALATLTMATVFVRGRLQ
>Mature_372_residues
MLSSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFAFAATLEVRNVDIAVYDQDAGRWSHELVQRLDSARFI
THIRHVDSQQQLHELIDRGEVIAALAIPVDFSRSIAAGESGRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAP
TPVVVRHWFNPNLVYRWFIVPGLTGILALFSALLITSLSIARERELGTFDQLLVSPTSTPEIIISKSLPALAIGTALGLF
MISAGVFLFGIPFTGSFALLLASLVLFILSVVGIGLMISAVSMTQQQAILGAFAIGVPAVLMSGFATPVENMPVVLQWLA
QAIPLTHFLIIVEGSFLKAMPPGDILASLWPLAVIALATLTMATVFVRGRLQ

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=366, Percent_Identity=41.8032786885246, Blast_Score=296, Evalue=2e-81,
Organism=Escherichia coli, GI48994943, Length=355, Percent_Identity=28.4507042253521, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1787011, Length=355, Percent_Identity=28.169014084507, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI226510979, Length=340, Percent_Identity=27.6470588235294, Blast_Score=99, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24650855, Length=361, Percent_Identity=21.0526315789474, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650853, Length=361, Percent_Identity=21.0526315789474, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI85725260, Length=358, Percent_Identity=21.7877094972067, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85725262, Length=358, Percent_Identity=21.7877094972067, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40163; Mature: 40163

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFAFAATLEVRNVDIAVYD
CCCCHHHHHHHHHHHHHHHHHHHHCCHHCEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEE
QDAGRWSHELVQRLDSARFITHIRHVDSQQQLHELIDRGEVIAALAIPVDFSRSIAAGES
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
GRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAPTPVVVRHWFNPNLVYRWFIV
CCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEH
PGLTGILALFSALLITSLSIARERELGTFDQLLVSPTSTPEIIISKSLPALAIGTALGLF
HCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
MISAGVFLFGIPFTGSFALLLASLVLFILSVVGIGLMISAVSMTQQQAILGAFAIGVPAV
HHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMSGFATPVENMPVVLQWLAQAIPLTHFLIIVEGSFLKAMPPGDILASLWPLAVIALATL
HHHCCCCCCCCCHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
TMATVFVRGRLQ
HHHHHHHHCCCC
>Mature Secondary Structure
MLSSAFSFTRLRAQFIKEVLSVLRDPRSRMVVFVPPILQLLVFAFAATLEVRNVDIAVYD
CCCCHHHHHHHHHHHHHHHHHHHHCCHHCEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEE
QDAGRWSHELVQRLDSARFITHIRHVDSQQQLHELIDRGEVIAALAIPVDFSRSIAAGES
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
GRAQVLVDGRRSNSGQITVAYLSTIAADVGAEVVPDAQAPTPVVVRHWFNPNLVYRWFIV
CCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEH
PGLTGILALFSALLITSLSIARERELGTFDQLLVSPTSTPEIIISKSLPALAIGTALGLF
HCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHH
MISAGVFLFGIPFTGSFALLLASLVLFILSVVGIGLMISAVSMTQQQAILGAFAIGVPAV
HHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMSGFATPVENMPVVLQWLAQAIPLTHFLIIVEGSFLKAMPPGDILASLWPLAVIALATL
HHHCCCCCCCCCHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
TMATVFVRGRLQ
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]