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The map label for this gene is ritA2 [C]

Identifier: 94310184

GI number: 94310184

Start: 1362583

End: 1363842

Strand: Direct

Name: ritA2 [C]

Synonym: Rmet_1239

Alternate gene names: 94310184

Gene position: 1362583-1363842 (Clockwise)

Preceding gene: 94310182

Following gene: 94310185

Centisome position: 34.69

GC content: 58.65

Gene sequence:

>1260_bases
ATGTTGGAACATCACTTCCGGTCGCTTAAGGCGATCGACCGCGTCAGAGCCCAGTGGCTGGGGCCACAGATTGAACGCTA
CGTGCAGTCGTTGGACGAACTGCATACCAGCAATGCCACGGTACGCCAGCATATCCGCGCACTTGGGCACTTCAATGATT
TTGTCATTGCCAGGGGTGTCACGAAGCTAGAAGCACTTCCCGACCATGTTGATGCCTTTGTCGAGTATTGGCACGCCGGT
CACGCAGGCTGGTGCAAGAACAACCAGGACCGAGCCGCTGTCACCGCACAGAGCCGTGTTCCGGTGGAGCGGATGCTTTG
CCTGGCCTTGCCGGATTACACACGCCCGAACAACCGGCCAGCGATGCCGTTTGCCAATACGGTTCCTGGTTTCTTGCCTT
TCTTGAACGATGAGAAGGGGCTTCGTCAGGAGTCGCAGCAGCGCTACCTCTATACGCTTCGTCCTTTTGAAGCCTATCTG
AACAGGGGCGGCATTGCTTTGTCGGGATTGGAACCTGCCCACATCAGCCGCTTTCTCGAAGAACGCGCCAAGACACTGCA
CAAGGCCGGCATGCGAGACACCGCCGGCGCCCTGCGCATCTTCCTGCGTTATCTGCATCGAGAAGGCATCGTGGCTACGG
ATCTCGTACGTAGTGTGCCGCGCGGCCGTATCTACCGCCAAGCATCCATTCCACGCGCAATTGGATGGCAGGATGTTGAG
CGGCTGCTGACCAGCATCGACCGCAGGTCCATCTTGGGCAAGCGCGACTACGCCATTCTGACGCTATTGGCCAGTTATGG
GTTGCGCGCCAGGGAGATCGCTGCGCTGTGCCTGGACGATTTCGACTGGACACATGCCCAGATCAGCATCCCAATGCGCA
AGGGAGGCCATTCGACGCGCTATCCCTTGTCGGCCACAGTGGGCGATGCTGTGATTTCCTACCTGCAAGCTCGGCGCAGT
GATGTTCCTCACCGCCAAGTCTTTCTCACCGCCAGGTCTCCCTACATTCCCATGCGCCACTGGACCGTTTCGGCCATGGT
TGGGATACGCATGCGAGACATCGGCATCCAAGTGACACGGGCGGGCTCTCACACACTGCGCCATGCCTGCGTGCAGCACC
TCGTGGAAGCCGACATGCCCTTCAAGGTCATTGGTGACTACGTAGGCCATAGCCATCCGTCTTCCACGCTTGTCTATGGC
AAGGTGGCGGTACACAAGCTGCGTCAGATCGTCCTCTTCCAAGGGGAGGACGTGCTATGA

Upstream 100 bases:

>100_bases
TAGGGGCATATTTCAAGCACTTCTGAGCACGGCCTGGCCACATAATGGCGGGTGGCGCGCAACATGACATTTCCTCTACT
TTTCCAGAAGGGTGATTGTC

Downstream 100 bases:

>100_bases
CTGCCCACTGGAATGGTTATCACAGCGCGCTGGCCACACATATCGAACAATACCTTCGGGCCAAGCGCGCCATGGGTTGC
AAGTTCGCATGCGAAGGCCG

Product: tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLEHHFRSLKAIDRVRAQWLGPQIERYVQSLDELHTSNATVRQHIRALGHFNDFVIARGVTKLEALPDHVDAFVEYWHAG
HAGWCKNNQDRAAVTAQSRVPVERMLCLALPDYTRPNNRPAMPFANTVPGFLPFLNDEKGLRQESQQRYLYTLRPFEAYL
NRGGIALSGLEPAHISRFLEERAKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVE
RLLTSIDRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHSTRYPLSATVGDAVISYLQARRS
DVPHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQVTRAGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYG
KVAVHKLRQIVLFQGEDVL

Sequences:

>Translated_419_residues
MLEHHFRSLKAIDRVRAQWLGPQIERYVQSLDELHTSNATVRQHIRALGHFNDFVIARGVTKLEALPDHVDAFVEYWHAG
HAGWCKNNQDRAAVTAQSRVPVERMLCLALPDYTRPNNRPAMPFANTVPGFLPFLNDEKGLRQESQQRYLYTLRPFEAYL
NRGGIALSGLEPAHISRFLEERAKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVE
RLLTSIDRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHSTRYPLSATVGDAVISYLQARRS
DVPHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQVTRAGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYG
KVAVHKLRQIVLFQGEDVL
>Mature_419_residues
MLEHHFRSLKAIDRVRAQWLGPQIERYVQSLDELHTSNATVRQHIRALGHFNDFVIARGVTKLEALPDHVDAFVEYWHAG
HAGWCKNNQDRAAVTAQSRVPVERMLCLALPDYTRPNNRPAMPFANTVPGFLPFLNDEKGLRQESQQRYLYTLRPFEAYL
NRGGIALSGLEPAHISRFLEERAKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVE
RLLTSIDRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHSTRYPLSATVGDAVISYLQARRS
DVPHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQVTRAGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYG
KVAVHKLRQIVLFQGEDVL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=25.7627118644068, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1790768, Length=158, Percent_Identity=31.6455696202532, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47622; Mature: 47622

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHHFRSLKAIDRVRAQWLGPQIERYVQSLDELHTSNATVRQHIRALGHFNDFVIARGV
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCC
TKLEALPDHVDAFVEYWHAGHAGWCKNNQDRAAVTAQSRVPVERMLCLALPDYTRPNNRP
HHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCC
AMPFANTVPGFLPFLNDEKGLRQESQQRYLYTLRPFEAYLNRGGIALSGLEPAHISRFLE
CCCCHHCCCCHHCCCCCCHHHHHHHHHHHEEEECHHHHHHCCCCEEECCCCHHHHHHHHH
ERAKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVE
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHCCCCCCCHHHHH
RLLTSIDRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHSTR
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEHHCCCCCCC
YPLSATVGDAVISYLQARRSDVPHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQVTR
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEECCEEEEE
AGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKVAVHKLRQIVLFQGEDVL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLEHHFRSLKAIDRVRAQWLGPQIERYVQSLDELHTSNATVRQHIRALGHFNDFVIARGV
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCC
TKLEALPDHVDAFVEYWHAGHAGWCKNNQDRAAVTAQSRVPVERMLCLALPDYTRPNNRP
HHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCC
AMPFANTVPGFLPFLNDEKGLRQESQQRYLYTLRPFEAYLNRGGIALSGLEPAHISRFLE
CCCCHHCCCCHHCCCCCCHHHHHHHHHHHEEEECHHHHHHCCCCEEECCCCHHHHHHHHH
ERAKTLHKAGMRDTAGALRIFLRYLHREGIVATDLVRSVPRGRIYRQASIPRAIGWQDVE
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEHHHCCCCCCCHHHHH
RLLTSIDRRSILGKRDYAILTLLASYGLRAREIAALCLDDFDWTHAQISIPMRKGGHSTR
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEHHCCCCCCC
YPLSATVGDAVISYLQARRSDVPHRQVFLTARSPYIPMRHWTVSAMVGIRMRDIGIQVTR
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEECCEEEEE
AGSHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKVAVHKLRQIVLFQGEDVL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]