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The map label for this gene is bzdR [H]

Identifier: 94310168

GI number: 94310168

Start: 1342404

End: 1343354

Strand: Reverse

Name: bzdR [H]

Synonym: Rmet_1223

Alternate gene names: 94310168

Gene position: 1343354-1342404 (Counterclockwise)

Preceding gene: 335055519

Following gene: 94310167

Centisome position: 34.2

GC content: 69.19

Gene sequence:

>951_bases
ATGCGCCGCGACCCTGATCCGCTTATGACCGCCGAAGGCCGCCCGGACAACCGCGCGACCGGTGAACGGGACCCGTATCT
CACGCATCTGGGCGAGCGCATCCGCTCACTGCGCGCGGCACGCGGCATGTCGCGCAAGGATCTGGCGCGCGGCGCGGACG
TATCGGAGCGCTATCTCGCCAATCTCGAAACCGGCACCGGCAATGCATCGGTGCTGCTGCTGCGGCAGGTCGCCAACGCG
CTGGACGTGCCACTGCCCGTGGTGCTGGCGGAGGTTGACGGCCATGCCGATGCGGGCGGCGCGGGCAACCCTCGCGCCAC
AGAGTTCTCGCAACTGATTCAGTGGCTCGCACAACTGCCGGCGAGCGATCTGGCCCGCGTGCGGGAAGCCGCGCGGCACG
CGCTGTCGCCAACGGAATCCCGTGACGCCCGCCATCGCCGTATCGCGCTGATCGGCCTGCGCGGCGCGGGCAAATCGACG
CTGGGCCGCGCGCTCGCGGCCGCGGAGGACATGCCGTTCGTCGAACTGAACGCCGCCATCGAAAGGGAGGCCGGCGCCAG
CCTTTCCGAGATCCATTCGCTGTACGGCCAGGCCGCGTATCGCCGCTACGAAATGCGCGCGCTGGAGCGCGTGCTGCGCG
AGAACGACACCATGGTGCTGGCCACGCCGGGCAGCCTGGTCTCCGAACCCGCCACGTTCAACCTGCTGCTATCGCGATGC
TTCACGATCTGGGTGCGCACGTCACCCGAGGAACACATGGCGCGCGTGGTGGCCCAAGGCGACATGCGACCGATGGAAGG
CAACCGCGAGGCGATGACTGACCTGCGGCGCATCCTGCAAGCCCGCACGCCACTCTATTCGCGCGCGGACGCCACGATCG
ACACGAGCGGCCAGGATGCCGCCACGTCACTGCACGCGCTGCAGGCGCAGATCCTGCACACACGGGCCTGA

Upstream 100 bases:

>100_bases
GGGTATGCACTATATGACCGCAGAGGCACGGATCCGCCGCGCACTTTCCTGCACGTATAATGCCGCCGCTCCGATTGTGG
AACCCCAACCGCCCTGAATC

Downstream 100 bases:

>100_bases
CACCCCTCCCTTCAGTTTTTTCTTCGCAACGGGCTTGCACGATCTTGCATCGCCTCGATTGATGCACTATATTTCATGCC
AGAAGATAAGGCACTATAGT

Product: anaerobic benzoate catabolism transcriptional regulator

Products: NA

Alternate protein names: SK [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MRRDPDPLMTAEGRPDNRATGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANA
LDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLPASDLARVREAARHALSPTESRDARHRRIALIGLRGAGKST
LGRALAAAEDMPFVELNAAIEREAGASLSEIHSLYGQAAYRRYEMRALERVLRENDTMVLATPGSLVSEPATFNLLLSRC
FTIWVRTSPEEHMARVVAQGDMRPMEGNREAMTDLRRILQARTPLYSRADATIDTSGQDAATSLHALQAQILHTRA

Sequences:

>Translated_316_residues
MRRDPDPLMTAEGRPDNRATGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANA
LDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLPASDLARVREAARHALSPTESRDARHRRIALIGLRGAGKST
LGRALAAAEDMPFVELNAAIEREAGASLSEIHSLYGQAAYRRYEMRALERVLRENDTMVLATPGSLVSEPATFNLLLSRC
FTIWVRTSPEEHMARVVAQGDMRPMEGNREAMTDLRRILQARTPLYSRADATIDTSGQDAATSLHALQAQILHTRA
>Mature_316_residues
MRRDPDPLMTAEGRPDNRATGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANA
LDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLPASDLARVREAARHALSPTESRDARHRRIALIGLRGAGKST
LGRALAAAEDMPFVELNAAIEREAGASLSEIHSLYGQAAYRRYEMRALERVLRENDTMVLATPGSLVSEPATFNLLLSRC
FTIWVRTSPEEHMARVVAQGDMRPMEGNREAMTDLRRILQARTPLYSRADATIDTSGQDAATSLHALQAQILHTRA

Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]

COG id: COG0703

COG function: function code E; Shikimate kinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the shikimate kinase family [H]

Homologues:

Organism=Escherichia coli, GI87082255, Length=176, Percent_Identity=34.6590909090909, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000623
- InterPro:   IPR023000 [H]

Pfam domain/function: PF01202 SKI [H]

EC number: =2.7.1.71 [H]

Molecular weight: Translated: 34600; Mature: 34600

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDPDPLMTAEGRPDNRATGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH
NLETGTGNASVLLLRQVANALDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLP
HCCCCCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ASDLARVREAARHALSPTESRDARHRRIALIGLRGAGKSTLGRALAAAEDMPFVELNAAI
HHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHH
EREAGASLSEIHSLYGQAAYRRYEMRALERVLRENDTMVLATPGSLVSEPATFNLLLSRC
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHH
FTIWVRTSPEEHMARVVAQGDMRPMEGNREAMTDLRRILQARTPLYSRADATIDTSGQDA
HHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHH
ATSLHALQAQILHTRA
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRDPDPLMTAEGRPDNRATGERDPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH
NLETGTGNASVLLLRQVANALDVPLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLP
HCCCCCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ASDLARVREAARHALSPTESRDARHRRIALIGLRGAGKSTLGRALAAAEDMPFVELNAAI
HHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHH
EREAGASLSEIHSLYGQAAYRRYEMRALERVLRENDTMVLATPGSLVSEPATFNLLLSRC
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCHHHHHHHHHH
FTIWVRTSPEEHMARVVAQGDMRPMEGNREAMTDLRRILQARTPLYSRADATIDTSGQDA
HHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCHH
ATSLHALQAQILHTRA
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA