| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is torA [H]
Identifier: 94310090
GI number: 94310090
Start: 1253406
End: 1255883
Strand: Direct
Name: torA [H]
Synonym: Rmet_1145
Alternate gene names: 94310090
Gene position: 1253406-1255883 (Clockwise)
Preceding gene: 94310089
Following gene: 94310092
Centisome position: 31.91
GC content: 63.12
Gene sequence:
>2478_bases ATGTCGAATGAATTTGGGAAGTCGGACACGAACATTTCTCGCCGCCGCTTTATCCAGGGCGCGCTGGCCGCGGGTACATT GGGTTCCACTGGGGCCACGCTACTGGCGTCGGGTGCGCGGTCGGCGACGGCGGGCAGTCGCGAGGTCCTGACTGGATCGC ACTGGGGGGCGTTTTACATGCGTGTGGACGATGGCCGGGTAACGGGCGTCCGGCCGTGGGAGAAGGACCCGAAGCCATCG CATCAATTGCCCGGTGTGCTGGACTCGATGTACTCACCGACGCGCATCCGCCATCCGATGGTGCGCCGGGCCTGGTTGGA ACGTGGGCCCGGCGCCGATCCCGAGGGGCGCGGCAAGGGCGATTTCGTTCGGGTCAGTTGGGAGAAGGCGCTCGATCTCG TGGCTGCGGAGCTGATGCGTGTGCGAAAGAAACACGGGCCGACCTCGATCTTCGGTGGCTCCTATGGCTGGAAGAGTCCC GGCAAGCTGCACAATTGCCAGACTCTGCTGGCACGCGCGCTGACCGTCAACGGCGGATTCGTCAGCCGCAGCGGGGACTA CTCGACCGGCGCGGCACAGGTGATCCTGCCTTACGTGGTGGGATCGATCGACGTCTACGAGCAACCCACCGCGTGGCCGG TGCTGGCCGAGCACACGGAACTGATGGTTTTCTGGGCGGCCGATCCGATGGTCACGAACCAGATCGGTTGGCAGGTGCCT GACCATGGCGCCTATCCTGGCATGGAAGCATTGAAGAGCAAGGGCGTAAAGGTGATCTGCATCGATCCGGTGCGAACGGA CACCCGCCGCTATTTCGATGCCGAATGGCTGGCACCGCGCCCGCATACCGATGTCGCGATGATGCTTGGGATCGCGCATA CGCTGTACACGGAAAAGCTGCACGATGCGAAGTTCCTGGCCCGCTATACCACTGGCTTCGATCGGTTCGTTCCCTATCTG ACGGGGGAGTCCGATGGTGTGGCCAAGAATGCGGAGTGGGCGGCGGGCATCTGCGAGATACCTGCGGACACGATCCGCGA TCTCGCGCGCCGATTCGCTTCGAAGCGCACGATGCTGGCGGCAGGGTGGTCCATTCAGCGTCAGCATCATGGAGAGCAGT CACACTGGATGCTGGTGACGCTGGCGTCGATGCTGGGGCAGATCGGATTGCCCGGTGGGGGCTATGGCTTCACCTATCAC TATGCCAATGGCGGCAGCCCCACGGCTACCGGGCCAGTGCTGCCGGGTATCGTCGGCGGTGCGAAGCCGCCGCCAGGATC GGAGTGGCTCGAAGCGGGTGGGACGGAGACGATACCGGTCTCGCGCATCGTCGAGATGCTCGAGAATCCCGGCAAGCCGT ACGACTTCAATGGCAAGCGCTCGAAGTACCCTGACATCCGGCTGGCCTACTGGGTCGGTGGCAATCCGTTCATGCATCAT CAGGATCGTAACCGGATGATCAAGGCGTGGCGCAAGCTCGATACGTTCATCGTGCAGGACTTCCAGTGGACAGCCACCGC GCGTCATGCGGACATCGTGCTTCCGTGCACTACGACCTACGAGCGCAATGACATCGAAGGCATTGGCGACTACTCGATGA GCCACATCCTGGCGATGCGCAAGGTGGTGGACCCACTGTTCGAGGCGCGCGACGACTACGACATCTTCGCGGCGATCTGC GAGCGCATGGGTACCGGCAAGGCGTTCACAGAGGGGCGCGACGACATGGCCTGGATTCGCACGTTCTACGAAGCGGCGCG TGTTCAGGCACGCGGTAAGCGCATGGAAATGCCAGTGTTCGATGTGTTCTGGAACAGCAACAAGCCGCTGGCGTTCCCGA TCGGCGAGGAGGCGAAGGGTTACATCCGGCACAAGGAGTTCCGCGATGACCCGCTGCTCAATGCGCTCGGCACGCCCTCG GGACGGATCGAGATCTACTCGTCGAACATCGCGCGCATGAAATACGACGATTGCCCGCCTCATCCCACCTGGATGGAGCC GCTGGAACGGCTGGGTGGGCCCACGACCAGGTATCCGTTGCATATCGACAGCAGCCATCCCGGAAGCCGCCTGCATTCGC AGTTGTGCGGCACGGTGCTGCGCGGGAGCTATGCCATCAAGGGACGCGAACCGTGCCTGATGCATCCGGAAGATGCCAAG ATCCGTGGGATTGCCGATGGCGACATCGTACGTGTGTTCAATGATCGCGGGCAGATGCTGGTAGGCGTCAGGCTTACCGA CGACATACGCCGTGGCGTTATCCGCGTGTGCGAGGGCGGGTGGTACGACCCTGCAGAGCCAGGCAAGCCCGGGACGCTGT GCCGATATGGCGACGTCAACAACCTGACGACTGGCATCGGTACCTCGAAGCTGGCGCAAGGCAATTGCGGACACACGGCC ATGGCCGACGTCGAGAAGTACCGGGGACCGGCACCTGCCGTCGAGGTGTTCAAAGCGCCGCGCGGGGGCGACGCCTGA
Upstream 100 bases:
>100_bases CTGGCGCGGCTGCTGGGCAATCTGAATCTGCTGGAGGCGCTGGGGCCCGATGGCCGGCCCCGCCTCGTCTCCGTGATCGA TGGACAAGACGGGAGTCACC
Downstream 100 bases:
>100_bases GTCGTGGTTCGCCCAAAAGAAGGTTCGCCCAATAGAAAACGCCGGCCATTGGCCGGCGTTTTCCTTGTCCTGCAATGCCG CCTGATCCTGTCTCGGGCGG
Product: multifunctional DMSO/TMAO-reductase
Products: NA
Alternate protein names: DMSO reductase; DMSOR [H]
Number of amino acids: Translated: 825; Mature: 824
Protein sequence:
>825_residues MSNEFGKSDTNISRRRFIQGALAAGTLGSTGATLLASGARSATAGSREVLTGSHWGAFYMRVDDGRVTGVRPWEKDPKPS HQLPGVLDSMYSPTRIRHPMVRRAWLERGPGADPEGRGKGDFVRVSWEKALDLVAAELMRVRKKHGPTSIFGGSYGWKSP GKLHNCQTLLARALTVNGGFVSRSGDYSTGAAQVILPYVVGSIDVYEQPTAWPVLAEHTELMVFWAADPMVTNQIGWQVP DHGAYPGMEALKSKGVKVICIDPVRTDTRRYFDAEWLAPRPHTDVAMMLGIAHTLYTEKLHDAKFLARYTTGFDRFVPYL TGESDGVAKNAEWAAGICEIPADTIRDLARRFASKRTMLAAGWSIQRQHHGEQSHWMLVTLASMLGQIGLPGGGYGFTYH YANGGSPTATGPVLPGIVGGAKPPPGSEWLEAGGTETIPVSRIVEMLENPGKPYDFNGKRSKYPDIRLAYWVGGNPFMHH QDRNRMIKAWRKLDTFIVQDFQWTATARHADIVLPCTTTYERNDIEGIGDYSMSHILAMRKVVDPLFEARDDYDIFAAIC ERMGTGKAFTEGRDDMAWIRTFYEAARVQARGKRMEMPVFDVFWNSNKPLAFPIGEEAKGYIRHKEFRDDPLLNALGTPS GRIEIYSSNIARMKYDDCPPHPTWMEPLERLGGPTTRYPLHIDSSHPGSRLHSQLCGTVLRGSYAIKGREPCLMHPEDAK IRGIADGDIVRVFNDRGQMLVGVRLTDDIRRGVIRVCEGGWYDPAEPGKPGTLCRYGDVNNLTTGIGTSKLAQGNCGHTA MADVEKYRGPAPAVEVFKAPRGGDA
Sequences:
>Translated_825_residues MSNEFGKSDTNISRRRFIQGALAAGTLGSTGATLLASGARSATAGSREVLTGSHWGAFYMRVDDGRVTGVRPWEKDPKPS HQLPGVLDSMYSPTRIRHPMVRRAWLERGPGADPEGRGKGDFVRVSWEKALDLVAAELMRVRKKHGPTSIFGGSYGWKSP GKLHNCQTLLARALTVNGGFVSRSGDYSTGAAQVILPYVVGSIDVYEQPTAWPVLAEHTELMVFWAADPMVTNQIGWQVP DHGAYPGMEALKSKGVKVICIDPVRTDTRRYFDAEWLAPRPHTDVAMMLGIAHTLYTEKLHDAKFLARYTTGFDRFVPYL TGESDGVAKNAEWAAGICEIPADTIRDLARRFASKRTMLAAGWSIQRQHHGEQSHWMLVTLASMLGQIGLPGGGYGFTYH YANGGSPTATGPVLPGIVGGAKPPPGSEWLEAGGTETIPVSRIVEMLENPGKPYDFNGKRSKYPDIRLAYWVGGNPFMHH QDRNRMIKAWRKLDTFIVQDFQWTATARHADIVLPCTTTYERNDIEGIGDYSMSHILAMRKVVDPLFEARDDYDIFAAIC ERMGTGKAFTEGRDDMAWIRTFYEAARVQARGKRMEMPVFDVFWNSNKPLAFPIGEEAKGYIRHKEFRDDPLLNALGTPS GRIEIYSSNIARMKYDDCPPHPTWMEPLERLGGPTTRYPLHIDSSHPGSRLHSQLCGTVLRGSYAIKGREPCLMHPEDAK IRGIADGDIVRVFNDRGQMLVGVRLTDDIRRGVIRVCEGGWYDPAEPGKPGTLCRYGDVNNLTTGIGTSKLAQGNCGHTA MADVEKYRGPAPAVEVFKAPRGGDA >Mature_824_residues SNEFGKSDTNISRRRFIQGALAAGTLGSTGATLLASGARSATAGSREVLTGSHWGAFYMRVDDGRVTGVRPWEKDPKPSH QLPGVLDSMYSPTRIRHPMVRRAWLERGPGADPEGRGKGDFVRVSWEKALDLVAAELMRVRKKHGPTSIFGGSYGWKSPG KLHNCQTLLARALTVNGGFVSRSGDYSTGAAQVILPYVVGSIDVYEQPTAWPVLAEHTELMVFWAADPMVTNQIGWQVPD HGAYPGMEALKSKGVKVICIDPVRTDTRRYFDAEWLAPRPHTDVAMMLGIAHTLYTEKLHDAKFLARYTTGFDRFVPYLT GESDGVAKNAEWAAGICEIPADTIRDLARRFASKRTMLAAGWSIQRQHHGEQSHWMLVTLASMLGQIGLPGGGYGFTYHY ANGGSPTATGPVLPGIVGGAKPPPGSEWLEAGGTETIPVSRIVEMLENPGKPYDFNGKRSKYPDIRLAYWVGGNPFMHHQ DRNRMIKAWRKLDTFIVQDFQWTATARHADIVLPCTTTYERNDIEGIGDYSMSHILAMRKVVDPLFEARDDYDIFAAICE RMGTGKAFTEGRDDMAWIRTFYEAARVQARGKRMEMPVFDVFWNSNKPLAFPIGEEAKGYIRHKEFRDDPLLNALGTPSG RIEIYSSNIARMKYDDCPPHPTWMEPLERLGGPTTRYPLHIDSSHPGSRLHSQLCGTVLRGSYAIKGREPCLMHPEDAKI RGIADGDIVRVFNDRGQMLVGVRLTDDIRRGVIRVCEGGWYDPAEPGKPGTLCRYGDVNNLTTGIGTSKLAQGNCGHTAM ADVEKYRGPAPAVEVFKAPRGGDA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081994, Length=814, Percent_Identity=47.9115479115479, Blast_Score=780, Evalue=0.0, Organism=Escherichia coli, GI1787231, Length=826, Percent_Identity=47.0944309927361, Blast_Score=752, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=785, Percent_Identity=47.0063694267516, Blast_Score=726, Evalue=0.0, Organism=Escherichia coli, GI87081797, Length=752, Percent_Identity=30.8510638297872, Blast_Score=297, Evalue=2e-81, Organism=Escherichia coli, GI1787870, Length=851, Percent_Identity=28.6721504112808, Blast_Score=272, Evalue=7e-74, Organism=Escherichia coli, GI171474008, Length=855, Percent_Identity=28.8888888888889, Blast_Score=248, Evalue=8e-67, Organism=Escherichia coli, GI3868721, Length=699, Percent_Identity=22.3175965665236, Blast_Score=132, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 91156; Mature: 91025
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEFGKSDTNISRRRFIQGALAAGTLGSTGATLLASGARSATAGSREVLTGSHWGAFYM CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCEEEE RVDDGRVTGVRPWEKDPKPSHQLPGVLDSMYSPTRIRHPMVRRAWLERGPGADPEGRGKG EECCCEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC DFVRVSWEKALDLVAAELMRVRKKHGPTSIFGGSYGWKSPGKLHNCQTLLARALTVNGGF CEEEEEHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCE VSRSGDYSTGAAQVILPYVVGSIDVYEQPTAWPVLAEHTELMVFWAADPMVTNQIGWQVP EECCCCCCCCHHHHHHHHHHCCCEECCCCCCCCEEECCCEEEEEEECCCEEECCCCCCCC DHGAYPGMEALKSKGVKVICIDPVRTDTRRYFDAEWLAPRPHTDVAMMLGIAHTLYTEKL CCCCCCCHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH HDAKFLARYTTGFDRFVPYLTGESDGVAKNAEWAAGICEIPADTIRDLARRFASKRTMLA HHHHHHHHHHCCHHHHCCEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCEEEE AGWSIQRQHHGEQSHWMLVTLASMLGQIGLPGGGYGFTYHYANGGSPTATGPVLPGIVGG ECCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCC AKPPPGSEWLEAGGTETIPVSRIVEMLENPGKPYDFNGKRSKYPDIRLAYWVGGNPFMHH CCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC QDRNRMIKAWRKLDTFIVQDFQWTATARHADIVLPCTTTYERNDIEGIGDYSMSHILAMR CHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH KVVDPLFEARDDYDIFAAICERMGTGKAFTEGRDDMAWIRTFYEAARVQARGKRMEMPVF HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE DVFWNSNKPLAFPIGEEAKGYIRHKEFRDDPLLNALGTPSGRIEIYSSNIARMKYDDCPP EEEECCCCCEEEECCCCCCHHHHHHHCCCCHHHHHCCCCCCEEEEEECCEEEEECCCCCC HPTWMEPLERLGGPTTRYPLHIDSSHPGSRLHSQLCGTVLRGSYAIKGREPCLMHPEDAK CCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEECCCCCC IRGIADGDIVRVFNDRGQMLVGVRLTDDIRRGVIRVCEGGWYDPAEPGKPGTLCRYGDVN EEECCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC NLTTGIGTSKLAQGNCGHTAMADVEKYRGPAPAVEVFKAPRGGDA CCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC >Mature Secondary Structure SNEFGKSDTNISRRRFIQGALAAGTLGSTGATLLASGARSATAGSREVLTGSHWGAFYM CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCEEEE RVDDGRVTGVRPWEKDPKPSHQLPGVLDSMYSPTRIRHPMVRRAWLERGPGADPEGRGKG EECCCEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC DFVRVSWEKALDLVAAELMRVRKKHGPTSIFGGSYGWKSPGKLHNCQTLLARALTVNGGF CEEEEEHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCE VSRSGDYSTGAAQVILPYVVGSIDVYEQPTAWPVLAEHTELMVFWAADPMVTNQIGWQVP EECCCCCCCCHHHHHHHHHHCCCEECCCCCCCCEEECCCEEEEEEECCCEEECCCCCCCC DHGAYPGMEALKSKGVKVICIDPVRTDTRRYFDAEWLAPRPHTDVAMMLGIAHTLYTEKL CCCCCCCHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH HDAKFLARYTTGFDRFVPYLTGESDGVAKNAEWAAGICEIPADTIRDLARRFASKRTMLA HHHHHHHHHHCCHHHHCCEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCEEEE AGWSIQRQHHGEQSHWMLVTLASMLGQIGLPGGGYGFTYHYANGGSPTATGPVLPGIVGG ECCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCC AKPPPGSEWLEAGGTETIPVSRIVEMLENPGKPYDFNGKRSKYPDIRLAYWVGGNPFMHH CCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC QDRNRMIKAWRKLDTFIVQDFQWTATARHADIVLPCTTTYERNDIEGIGDYSMSHILAMR CHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH KVVDPLFEARDDYDIFAAICERMGTGKAFTEGRDDMAWIRTFYEAARVQARGKRMEMPVF HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE DVFWNSNKPLAFPIGEEAKGYIRHKEFRDDPLLNALGTPSGRIEIYSSNIARMKYDDCPP EEEECCCCCEEEECCCCCCHHHHHHHCCCCHHHHHCCCCCCEEEEEECCEEEEECCCCCC HPTWMEPLERLGGPTTRYPLHIDSSHPGSRLHSQLCGTVLRGSYAIKGREPCLMHPEDAK CCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEECCCCCC IRGIADGDIVRVFNDRGQMLVGVRLTDDIRRGVIRVCEGGWYDPAEPGKPGTLCRYGDVN EEECCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC NLTTGIGTSKLAQGNCGHTAMADVEKYRGPAPAVEVFKAPRGGDA CCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8856102; 8890911; 8890912; 10835270; 10985771 [H]