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The map label for this gene is rbn [C]

Identifier: 94310076

GI number: 94310076

Start: 1237665

End: 1239008

Strand: Direct

Name: rbn [C]

Synonym: Rmet_1131

Alternate gene names: 94310076

Gene position: 1237665-1239008 (Clockwise)

Preceding gene: 94310072

Following gene: 94310080

Centisome position: 31.51

GC content: 65.33

Gene sequence:

>1344_bases
ATGACCGCTGTACGCATCGCCCGCCTGCGCAGGGAGTGGAACCTGCAGAAAGTGCGTGCACTTGCCCGCTATGCGTTGCG
CCGCGCCGGCGAGGACCGCCTGCCCCAGGTATCGGCCAGCCTGACATTCACGACCGTGCTGGCCGTGGTACCGGTGCTGA
CCGTTGCTTTCGCGCTGCTTGCCGCGTTTCCGGTGTTCCGGGATTTCCGCGGCCAGATCGAGATGTTCCTGTTCCAGAAC
CTGATTCCGGGCGGCAATATCAGCGATTCGGTGTCGCGTTATATCGGACAGTTCTCCCGCAGCGCGCGTGGCCTGACGGC
ATTGGGCCTGGCCGGGCTGATGGTGACTTCCGTGCTGACAATGCTGACCGTCGAGGACGCGCTCAACGCGATCTGGCGCG
TCAGGCGGCGCCGGCCATTCGCGCAACGGGTGCTGGTGTTCTGGGCCGTGCTGACGCTCGGGCCGGTGCTGATCGGCGCG
AGCCTTTCCGTCAGTTCGTACCTGATGTCGGTCTCGATGGGTTACGTCGGCAACCTGCCGTTTGGCGTCGGGTTCGTGAT
CAGTCTGGTGCCGGTGCTGCTCTCTGCGCTCGCCTTTGCCTTTCTTTACATGGCGGTGCCCAATGCCTACGTGGAGTGGC
GCGATGCGATTGTCGCCGGCATCGTGGCGGCCGTCGCTTTTGAAGTGGCCAAGCGCGGCTTCGGCTACTTCATCACCCAT
ATCCCCACCTACACGGCCGTGTATGGCACCTTCGCCGTGCTGCCGCTGTTCCTGCTGTGGATGTATGTGAGCTGGCTGGT
GACGCTGCTCGGCGCGACGATTGCGGCCAACCTGCCGGTGATCCGCGAGGGACACTGGCGTCGGCGGACGTTCGCGGGTA
GCGAATTCTTCGACGCGCTTGGCATCCTGTATCTGCTGTACCGCGCGCGGGACGAGGTGCCGCGCAGCGTTGGCGAACTG
GATATGGGTCGCAAGCTGCGGATGGAGGCCGACTATCTCTCCGGCCTGCTGACCAAGCTCAAGGCCATGCATCTGGTGGG
CAAGCTCCAGCAGGATCGGGGTCAGGCGCATTGGGCGTTGCTCTGCGATCCGTCGCAGGTCACGCTGCGCACGCTGCACG
ACAGGCTGGTGCTGAACATGGCACGCCTGCCGCGCACGGCGCTGGCCCAACAGATGCAGGGGGCGGAGGCATTGCGGTCG
ATCCTGGAGAATCCGCAACTCGAGCAGACGCTGGACGCGGTGTTCCGCCAGCAGACGGCCGGGGCGGCCGCGAACGAGGA
AACGGGCCACCGCGATCGCAAGGTGGTGGAAGTCGTCCCGCCGGGCTGGCACGGACAGGTCTAG

Upstream 100 bases:

>100_bases
CGGTCATGGATGGATTGGCGGGGCGCGGTCGGCGCAAGTGCATTGCGCGTATTATATTTGCGAGAGTTTGCCATCATCCC
ATCGAGGAGAAAGCCCCCGC

Downstream 100 bases:

>100_bases
GAAACCGTTTTCAGATTGATTCTGGCGTCGTTGCGGGGCCTTGCCGTACCACCGGTACTGTTTGCGGCCCCGCGTCAAGC
CAGAACGGCTGCGCTTCATC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MTAVRIARLRREWNLQKVRALARYALRRAGEDRLPQVSASLTFTTVLAVVPVLTVAFALLAAFPVFRDFRGQIEMFLFQN
LIPGGNISDSVSRYIGQFSRSARGLTALGLAGLMVTSVLTMLTVEDALNAIWRVRRRRPFAQRVLVFWAVLTLGPVLIGA
SLSVSSYLMSVSMGYVGNLPFGVGFVISLVPVLLSALAFAFLYMAVPNAYVEWRDAIVAGIVAAVAFEVAKRGFGYFITH
IPTYTAVYGTFAVLPLFLLWMYVSWLVTLLGATIAANLPVIREGHWRRRTFAGSEFFDALGILYLLYRARDEVPRSVGEL
DMGRKLRMEADYLSGLLTKLKAMHLVGKLQQDRGQAHWALLCDPSQVTLRTLHDRLVLNMARLPRTALAQQMQGAEALRS
ILENPQLEQTLDAVFRQQTAGAAANEETGHRDRKVVEVVPPGWHGQV

Sequences:

>Translated_447_residues
MTAVRIARLRREWNLQKVRALARYALRRAGEDRLPQVSASLTFTTVLAVVPVLTVAFALLAAFPVFRDFRGQIEMFLFQN
LIPGGNISDSVSRYIGQFSRSARGLTALGLAGLMVTSVLTMLTVEDALNAIWRVRRRRPFAQRVLVFWAVLTLGPVLIGA
SLSVSSYLMSVSMGYVGNLPFGVGFVISLVPVLLSALAFAFLYMAVPNAYVEWRDAIVAGIVAAVAFEVAKRGFGYFITH
IPTYTAVYGTFAVLPLFLLWMYVSWLVTLLGATIAANLPVIREGHWRRRTFAGSEFFDALGILYLLYRARDEVPRSVGEL
DMGRKLRMEADYLSGLLTKLKAMHLVGKLQQDRGQAHWALLCDPSQVTLRTLHDRLVLNMARLPRTALAQQMQGAEALRS
ILENPQLEQTLDAVFRQQTAGAAANEETGHRDRKVVEVVPPGWHGQV
>Mature_446_residues
TAVRIARLRREWNLQKVRALARYALRRAGEDRLPQVSASLTFTTVLAVVPVLTVAFALLAAFPVFRDFRGQIEMFLFQNL
IPGGNISDSVSRYIGQFSRSARGLTALGLAGLMVTSVLTMLTVEDALNAIWRVRRRRPFAQRVLVFWAVLTLGPVLIGAS
LSVSSYLMSVSMGYVGNLPFGVGFVISLVPVLLSALAFAFLYMAVPNAYVEWRDAIVAGIVAAVAFEVAKRGFGYFITHI
PTYTAVYGTFAVLPLFLLWMYVSWLVTLLGATIAANLPVIREGHWRRRTFAGSEFFDALGILYLLYRARDEVPRSVGELD
MGRKLRMEADYLSGLLTKLKAMHLVGKLQQDRGQAHWALLCDPSQVTLRTLHDRLVLNMARLPRTALAQQMQGAEALRSI
LENPQLEQTLDAVFRQQTAGAAANEETGHRDRKVVEVVPPGWHGQV

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=269, Percent_Identity=40.5204460966543, Blast_Score=209, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 49650; Mature: 49519

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
TAVRIARLRREWNLQKVRALARYALRRAGEDRLPQVSASLTFTTVLAVVPVLTVAFALL
CHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]