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The map label for this gene is ocd [H]

Identifier: 94310061

GI number: 94310061

Start: 1217577

End: 1218644

Strand: Reverse

Name: ocd [H]

Synonym: Rmet_1116

Alternate gene names: 94310061

Gene position: 1218644-1217577 (Counterclockwise)

Preceding gene: 94310062

Following gene: 94310060

Centisome position: 31.02

GC content: 65.36

Gene sequence:

>1068_bases
ATGACCAACTCGCCCACGCTCACAGCCACCACCTTGCCCTCTGCATCGAACCCCTCCCACACCAAGCCCGAACTACGCTA
CCTGAGCCGCGACGACCTGATCGCGCTGGGCGCGGGCCACTCCGATGCCTTCGTGCAAGCCATTACCGAAGGGCTCGCCA
TCCACGCGCGCGGCGAGCATGTGCAGCCACTCAAGCCCTATCTGCGCTGGTCCGGCGCCGACCATATCGCCGACCGCATC
ATCGCGATGCCCTGCTACATCGGCGGCGACAACCCAATCGCCGGCATCAAGTGGATCGGCAGCCGCCAGCACAACCCCGC
GCGATTCGGCCTGGAGCGCGCCAGCGCGGTGATCGTGCTCAACGACGCCACCACCAACTACCCGGTGGCGATCATGGAAG
GCGGCCTGATCAGCGGCATGCGCACCGCCGCCATCACGGCAGTGGCCACGCGGCATCTGGCGCGTAGCGGCTTCACCGAT
GTCGCCTGCATCGGCTGCGGCCCGATCGCACAGATGCAGATGCAGACGCTCCTCGAGCAATTCCCGCAGATCCGCGCCGT
GCACCTGTTCGATCTCTCGCGCGACGCCATGCATGCGATGCGGTCGATGCTCGGCAGCCGCTTTCCCGCCGTGGGCTGGG
AACTGTGCGGCAGCGCCGAACTGGCCGTACGCGCCGCCGACGTGGTGGTGACCTGCACGGTCACCGATACGCCGTACCTC
GAACACGCCTGGCTCAAGACCGGCGCCTTCGTCTGCAACGTGTCGATCATGGACGTGCACAAGGATGTTTACGAGAAGGT
CGACAAGGTGATCGTCGACGACTGGGACCAGTCCAACCGCGAAAAGAAAATCATCAACCAGCTTGTGCTCGAAGGCCGCT
TCAGCCGCGAGCAATTGCACGCGGAACTGGGCGAGATCGTGATCGGCAGGAAGCCCGGCCGCGAGCGCGACGACGAGATC
ATCCTGCTCAATCCGATGGGCATGGCGCTCGACGACATGGTCTGCGCACGCCACTTCTACCACCTGGCGCTGGAACGCAA
CGCCGGCACGCGCCTGCCGCTGCTATGA

Upstream 100 bases:

>100_bases
ATGACGACGCCTGGCTCGCACGCATCGCCGCGCGTCGCGCCGTGCCGAACCTCGCCGCTCTTCCTACCGTTGCCTCATTG
ATCCCCGCCGGAGTGTCCGC

Downstream 100 bases:

>100_bases
GTGGCGGCTTCCACGAACGCCTGCTGGTGCAGGACCTGATCGACGCGCTGTGGCTGGAGGACCTGCATGGATTTCGCAAC
CACGCGCGTATCGTAGATCA

Product: ornithine cyclodeaminase (OCD)

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MTNSPTLTATTLPSASNPSHTKPELRYLSRDDLIALGAGHSDAFVQAITEGLAIHARGEHVQPLKPYLRWSGADHIADRI
IAMPCYIGGDNPIAGIKWIGSRQHNPARFGLERASAVIVLNDATTNYPVAIMEGGLISGMRTAAITAVATRHLARSGFTD
VACIGCGPIAQMQMQTLLEQFPQIRAVHLFDLSRDAMHAMRSMLGSRFPAVGWELCGSAELAVRAADVVVTCTVTDTPYL
EHAWLKTGAFVCNVSIMDVHKDVYEKVDKVIVDDWDQSNREKKIINQLVLEGRFSREQLHAELGEIVIGRKPGRERDDEI
ILLNPMGMALDDMVCARHFYHLALERNAGTRLPLL

Sequences:

>Translated_355_residues
MTNSPTLTATTLPSASNPSHTKPELRYLSRDDLIALGAGHSDAFVQAITEGLAIHARGEHVQPLKPYLRWSGADHIADRI
IAMPCYIGGDNPIAGIKWIGSRQHNPARFGLERASAVIVLNDATTNYPVAIMEGGLISGMRTAAITAVATRHLARSGFTD
VACIGCGPIAQMQMQTLLEQFPQIRAVHLFDLSRDAMHAMRSMLGSRFPAVGWELCGSAELAVRAADVVVTCTVTDTPYL
EHAWLKTGAFVCNVSIMDVHKDVYEKVDKVIVDDWDQSNREKKIINQLVLEGRFSREQLHAELGEIVIGRKPGRERDDEI
ILLNPMGMALDDMVCARHFYHLALERNAGTRLPLL
>Mature_354_residues
TNSPTLTATTLPSASNPSHTKPELRYLSRDDLIALGAGHSDAFVQAITEGLAIHARGEHVQPLKPYLRWSGADHIADRII
AMPCYIGGDNPIAGIKWIGSRQHNPARFGLERASAVIVLNDATTNYPVAIMEGGLISGMRTAAITAVATRHLARSGFTDV
ACIGCGPIAQMQMQTLLEQFPQIRAVHLFDLSRDAMHAMRSMLGSRFPAVGWELCGSAELAVRAADVVVTCTVTDTPYLE
HAWLKTGAFVCNVSIMDVHKDVYEKVDKVIVDDWDQSNREKKIINQLVLEGRFSREQLHAELGEIVIGRKPGRERDDEII
LLNPMGMALDDMVCARHFYHLALERNAGTRLPLL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=227, Percent_Identity=26.8722466960352, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI62241008, Length=227, Percent_Identity=26.8722466960352, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 39022; Mature: 38891

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSPTLTATTLPSASNPSHTKPELRYLSRDDLIALGAGHSDAFVQAITEGLAIHARGEH
CCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCEEEEECCCC
VQPLKPYLRWSGADHIADRIIAMPCYIGGDNPIAGIKWIGSRQHNPARFGLERASAVIVL
CCCCCHHHHCCCCHHHHHHHEEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCEEEEE
NDATTNYPVAIMEGGLISGMRTAAITAVATRHLARSGFTDVACIGCGPIAQMQMQTLLEQ
ECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
FPQIRAVHLFDLSRDAMHAMRSMLGSRFPAVGWELCGSAELAVRAADVVVTCTVTDTPYL
CCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCCH
EHAWLKTGAFVCNVSIMDVHKDVYEKVDKVIVDDWDQSNREKKIINQLVLEGRFSREQLH
HHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH
AELGEIVIGRKPGRERDDEIILLNPMGMALDDMVCARHFYHLALERNAGTRLPLL
HHHHHEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
>Mature Secondary Structure 
TNSPTLTATTLPSASNPSHTKPELRYLSRDDLIALGAGHSDAFVQAITEGLAIHARGEH
CCCCCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCEEEEECCCC
VQPLKPYLRWSGADHIADRIIAMPCYIGGDNPIAGIKWIGSRQHNPARFGLERASAVIVL
CCCCCHHHHCCCCHHHHHHHEEEEEEECCCCCCCCEEEECCCCCCCHHHCCCCCCEEEEE
NDATTNYPVAIMEGGLISGMRTAAITAVATRHLARSGFTDVACIGCGPIAQMQMQTLLEQ
ECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
FPQIRAVHLFDLSRDAMHAMRSMLGSRFPAVGWELCGSAELAVRAADVVVTCTVTDTPYL
CCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEEEEEEEEEEECCCCCH
EHAWLKTGAFVCNVSIMDVHKDVYEKVDKVIVDDWDQSNREKKIINQLVLEGRFSREQLH
HHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHH
AELGEIVIGRKPGRERDDEIILLNPMGMALDDMVCARHFYHLALERNAGTRLPLL
HHHHHEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]