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The map label for this gene is ycfD [H]

Identifier: 94310017

GI number: 94310017

Start: 1163960

End: 1165087

Strand: Reverse

Name: ycfD [H]

Synonym: Rmet_1072

Alternate gene names: 94310017

Gene position: 1165087-1163960 (Counterclockwise)

Preceding gene: 94310019

Following gene: 335055514

Centisome position: 29.66

GC content: 62.06

Gene sequence:

>1128_bases
ATGACGCCCTCAGCCTTCATGCGTGATATCTGGCACCGCAAGCCGCTGCTGATTCGACAGGCCGTGCCGGAAATCGTGCC
CCCAGTGTCGCGCGAGGCGCTTTTCGAGCTTGCCGATCGCGACGACGTGGAATCACGTCTGGTGTCGTTCTTTCGCAACC
GCTGGAAGCTCGAACACGGACCGTTCTCCGAGGACAACCTGCCCTCGCGCAAGACCGGCAAGTGGTCGTTGCTGGTCCAG
GGCGTCAACCTGCACGATCGCGCGGCAGCCGAGCTAATGAGCCAGTTCCGCTTCGTTCCCGATGCCCGGCTTGACGACGT
GATGATCAGCTATGCCACCGACGGCGGCGGCGTGGGACCTCACTTCGACTCCTACGATGTGTTCCTGCTGCAAGTATCGG
GCCGGCGCCGCTGGCGCATTTCGTCACAGACGAAGCTCGACCTGATCCCCGACCTGCCCCTCAAGATCCTTTCGGATTTC
AGCGCCGAGCAGGAATGGGTACTCGAGCCCGGCGACATGCTCTACCTGCCACCTCAGTACGCACACGACGGCGTAGCCGA
AGGCGAATGCATGACGGCCTCGATTGGTTTCCGCGCCCCCGCCTATCGCGAGCTCGCAGGTCATTTTCTGGCCTGGCTTT
CGGAGACCGTTGCCGACAACGAAGGCCTCGACGGACGTTACGCCGATGCAGGCGAATCGGCGACCTCGACGCCTGCGCAA
CTGCCGGCAAATCTGGCACGGGCGGTGGCGGAACGCCTTCAGTCACTCAAATGGAACGCCGGCATGGTGTCGGAATTCCT
TGGTACGCATTTGTCCGAGCCGAAACCGTCCGTGCAATTCGACGAAATCGAGGAAATTCCGCTGCGTCAGTTCACGAAGC
TGGCGCGCACGCATGGTGTTGTTTTGGCGCCCGCTTCCGTTGCGCTCTATGACCGCACGCACTTCTTCCTGAACGGCGAA
GCCTACGAGCCGCCAGCATCGCTGGCCAAGTGGCTGCGACGTCTGGCTGACCGCCGTCAGCTCACCGCGAGCGAGGTCGA
GGCATGTGTTGCGCTGCCCGACTTGATGGATACCTTCCACGACTGGGCGATGGAAGGATGGCTCCAGATTGCACCGAAAC
GCGTGTAA

Upstream 100 bases:

>100_bases
ATTTTCAATTCTTGACTCCATGAGCGATTCCGCATTATACGCGCAGGCCTTGCCTCCGGAACCTGTCGATCCCGACGCGC
CGCTCACCCTGCTCGGCGGC

Downstream 100 bases:

>100_bases
TAATGCGTAACAAATCAAACCTGCAAATCTTGACTGTACACAAGCAGGGGAAACGCGGATATAATCGCCCGCTGGCTAGT
ACTGTGGACCACTGCACTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTPSAFMRDIWHRKPLLIRQAVPEIVPPVSREALFELADRDDVESRLVSFFRNRWKLEHGPFSEDNLPSRKTGKWSLLVQ
GVNLHDRAAAELMSQFRFVPDARLDDVMISYATDGGGVGPHFDSYDVFLLQVSGRRRWRISSQTKLDLIPDLPLKILSDF
SAEQEWVLEPGDMLYLPPQYAHDGVAEGECMTASIGFRAPAYRELAGHFLAWLSETVADNEGLDGRYADAGESATSTPAQ
LPANLARAVAERLQSLKWNAGMVSEFLGTHLSEPKPSVQFDEIEEIPLRQFTKLARTHGVVLAPASVALYDRTHFFLNGE
AYEPPASLAKWLRRLADRRQLTASEVEACVALPDLMDTFHDWAMEGWLQIAPKRV

Sequences:

>Translated_375_residues
MTPSAFMRDIWHRKPLLIRQAVPEIVPPVSREALFELADRDDVESRLVSFFRNRWKLEHGPFSEDNLPSRKTGKWSLLVQ
GVNLHDRAAAELMSQFRFVPDARLDDVMISYATDGGGVGPHFDSYDVFLLQVSGRRRWRISSQTKLDLIPDLPLKILSDF
SAEQEWVLEPGDMLYLPPQYAHDGVAEGECMTASIGFRAPAYRELAGHFLAWLSETVADNEGLDGRYADAGESATSTPAQ
LPANLARAVAERLQSLKWNAGMVSEFLGTHLSEPKPSVQFDEIEEIPLRQFTKLARTHGVVLAPASVALYDRTHFFLNGE
AYEPPASLAKWLRRLADRRQLTASEVEACVALPDLMDTFHDWAMEGWLQIAPKRV
>Mature_374_residues
TPSAFMRDIWHRKPLLIRQAVPEIVPPVSREALFELADRDDVESRLVSFFRNRWKLEHGPFSEDNLPSRKTGKWSLLVQG
VNLHDRAAAELMSQFRFVPDARLDDVMISYATDGGGVGPHFDSYDVFLLQVSGRRRWRISSQTKLDLIPDLPLKILSDFS
AEQEWVLEPGDMLYLPPQYAHDGVAEGECMTASIGFRAPAYRELAGHFLAWLSETVADNEGLDGRYADAGESATSTPAQL
PANLARAVAERLQSLKWNAGMVSEFLGTHLSEPKPSVQFDEIEEIPLRQFTKLARTHGVVLAPASVALYDRTHFFLNGEA
YEPPASLAKWLRRLADRRQLTASEVEACVALPDLMDTFHDWAMEGWLQIAPKRV

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=362, Percent_Identity=33.9779005524862, Blast_Score=175, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42227; Mature: 42096

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSAFMRDIWHRKPLLIRQAVPEIVPPVSREALFELADRDDVESRLVSFFRNRWKLEHG
CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
PFSEDNLPSRKTGKWSLLVQGVNLHDRAAAELMSQFRFVPDARLDDVMISYATDGGGVGP
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
HFDSYDVFLLQVSGRRRWRISSQTKLDLIPDLPLKILSDFSAEQEWVLEPGDMLYLPPQY
CCCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCEEEECCHH
AHDGVAEGECMTASIGFRAPAYRELAGHFLAWLSETVADNEGLDGRYADAGESATSTPAQ
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
LPANLARAVAERLQSLKWNAGMVSEFLGTHLSEPKPSVQFDEIEEIPLRQFTKLARTHGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCE
VLAPASVALYDRTHFFLNGEAYEPPASLAKWLRRLADRRQLTASEVEACVALPDLMDTFH
EEECCCEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DWAMEGWLQIAPKRV
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
TPSAFMRDIWHRKPLLIRQAVPEIVPPVSREALFELADRDDVESRLVSFFRNRWKLEHG
CHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
PFSEDNLPSRKTGKWSLLVQGVNLHDRAAAELMSQFRFVPDARLDDVMISYATDGGGVGP
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
HFDSYDVFLLQVSGRRRWRISSQTKLDLIPDLPLKILSDFSAEQEWVLEPGDMLYLPPQY
CCCCCEEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCEEEECCHH
AHDGVAEGECMTASIGFRAPAYRELAGHFLAWLSETVADNEGLDGRYADAGESATSTPAQ
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
LPANLARAVAERLQSLKWNAGMVSEFLGTHLSEPKPSVQFDEIEEIPLRQFTKLARTHGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCE
VLAPASVALYDRTHFFLNGEAYEPPASLAKWLRRLADRRQLTASEVEACVALPDLMDTFH
EEECCCEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DWAMEGWLQIAPKRV
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]