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The map label for this gene is yjjV [H]

Identifier: 94309987

GI number: 94309987

Start: 1132266

End: 1133093

Strand: Direct

Name: yjjV [H]

Synonym: Rmet_1042

Alternate gene names: 94309987

Gene position: 1132266-1133093 (Clockwise)

Preceding gene: 94309986

Following gene: 94309988

Centisome position: 28.82

GC content: 67.15

Gene sequence:

>828_bases
ATGTGGATCGACACGCACTGCCACCTCGACGCCAGCGAGTTCGATGCCGACCGGGCTGACGTCACGGACGCGGCTGCGGC
TGCCGGTGTGACCGGCATTGTGTTGCCGGCCGTGGCAGTGGCGAACTTCGACGTGGTGCGTGGGCTGGCGCATACCGACC
CACGCTGTGTCTATGCGCTCGGCATCCACCCGCTGTACTCGCGGGCCGCCGGGCAGGCCGATCTCGATGAACTGCGCCGC
CAGGTGACGGCGTCGATCGACGATCCGCGCCTCGTTGCCATTGGCGAAATCGGGCTCGACTTCTTCGTGCCTGGGCTCGA
CGCCGCCCATCAAACCTGGCTGTACGCGGAGCAGTTGAAGATCGCGCGCGACTTCGACCTGCCCGTGCTGCTGCACGTGC
GCAAGTCGCAGGACCAGATCCTGGCGCAACTGCGTCGCGCGGGCGTGCGGCAGGGTATCGCCCATGCGTTCAACGGCAGT
CACGATCAGGCGCACCATTACGTGACCCACGGCATGAAGCTCGGATTCGGCGGCAACGTGACGTTTTCCCGCGCGCGGCA
GATCCGCCGCCTGGCCGCCGAATTGCCGATCGAGTCGATCGTGCTGGAAACGGACGCGCCCGATATCGCGCCCGCCTGGC
TTTCTGACGATCAGTTCGGCGAGCAGCACAAGGCCCGCAACACGCCTGCGGAAGTGGTGGGCGTGGCGCGCGTCATGGCC
GAGCTGCGCGGCGTCTCGGAACGAGAGCTTGCCGACACCATGTGGCGCAATTCCGTGGCCGCGCTGCCAAGACTGGCGGC
GTTCGCGGATGTCATGGCCCCTCGCTAG

Upstream 100 bases:

>100_bases
CGACCGCGTGCTGCGGCTGCGCGACGGTCACTTGCATCAAGAGCGTTGAGCGCCGGTAGCCAGCCCACAGTCTTCCCTTC
GCTATCATTCAGCCCCCGCC

Downstream 100 bases:

>100_bases
GCGGCCCTCAGCGCTCCGCGCGCAGATTTAACCTTCTGACACACCAACGTATCGCTCGGTCACGTTTCCCAGCTGTCAAT
CGCAGTACAAATAAGCCCTT

Product: Mg-dependent DNase (TatD family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MWIDTHCHLDASEFDADRADVTDAAAAAGVTGIVLPAVAVANFDVVRGLAHTDPRCVYALGIHPLYSRAAGQADLDELRR
QVTASIDDPRLVAIGEIGLDFFVPGLDAAHQTWLYAEQLKIARDFDLPVLLHVRKSQDQILAQLRRAGVRQGIAHAFNGS
HDQAHHYVTHGMKLGFGGNVTFSRARQIRRLAAELPIESIVLETDAPDIAPAWLSDDQFGEQHKARNTPAEVVGVARVMA
ELRGVSERELADTMWRNSVAALPRLAAFADVMAPR

Sequences:

>Translated_275_residues
MWIDTHCHLDASEFDADRADVTDAAAAAGVTGIVLPAVAVANFDVVRGLAHTDPRCVYALGIHPLYSRAAGQADLDELRR
QVTASIDDPRLVAIGEIGLDFFVPGLDAAHQTWLYAEQLKIARDFDLPVLLHVRKSQDQILAQLRRAGVRQGIAHAFNGS
HDQAHHYVTHGMKLGFGGNVTFSRARQIRRLAAELPIESIVLETDAPDIAPAWLSDDQFGEQHKARNTPAEVVGVARVMA
ELRGVSERELADTMWRNSVAALPRLAAFADVMAPR
>Mature_275_residues
MWIDTHCHLDASEFDADRADVTDAAAAAGVTGIVLPAVAVANFDVVRGLAHTDPRCVYALGIHPLYSRAAGQADLDELRR
QVTASIDDPRLVAIGEIGLDFFVPGLDAAHQTWLYAEQLKIARDFDLPVLLHVRKSQDQILAQLRRAGVRQGIAHAFNGS
HDQAHHYVTHGMKLGFGGNVTFSRARQIRRLAAELPIESIVLETDAPDIAPAWLSDDQFGEQHKARNTPAEVVGVARVMA
ELRGVSERELADTMWRNSVAALPRLAAFADVMAPR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=276, Percent_Identity=28.9855072463768, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI110349734, Length=275, Percent_Identity=28.7272727272727, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI226061853, Length=279, Percent_Identity=27.9569892473118, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI226061614, Length=269, Percent_Identity=27.1375464684015, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI14042943, Length=268, Percent_Identity=24.6268656716418, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI225903439, Length=236, Percent_Identity=25.4237288135593, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI225903424, Length=234, Percent_Identity=25.2136752136752, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=36.8217054263566, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=30.7984790874525, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI48994985, Length=254, Percent_Identity=29.5275590551181, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=278, Percent_Identity=25.1798561151079, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=24.4444444444444, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI221330018, Length=213, Percent_Identity=27.6995305164319, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24586117, Length=213, Percent_Identity=27.6995305164319, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30015; Mature: 30015

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDASEFDADRADVTDAAAAAGVTGIVLPAVAVANFDVVRGLAHTDPRCVYAL
CCCCCCCCCCHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GIHPLYSRAAGQADLDELRRQVTASIDDPRLVAIGEIGLDFFVPGLDAAHQTWLYAEQLK
CCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
IARDFDLPVLLHVRKSQDQILAQLRRAGVRQGIAHAFNGSHDQAHHYVTHGMKLGFGGNV
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCC
TFSRARQIRRLAAELPIESIVLETDAPDIAPAWLSDDQFGEQHKARNTPAEVVGVARVMA
HHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCHHCHHHHCCCCHHHHHHHHHHHH
ELRGVSERELADTMWRNSVAALPRLAAFADVMAPR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDASEFDADRADVTDAAAAAGVTGIVLPAVAVANFDVVRGLAHTDPRCVYAL
CCCCCCCCCCHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
GIHPLYSRAAGQADLDELRRQVTASIDDPRLVAIGEIGLDFFVPGLDAAHQTWLYAEQLK
CCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHH
IARDFDLPVLLHVRKSQDQILAQLRRAGVRQGIAHAFNGSHDQAHHYVTHGMKLGFGGNV
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCC
TFSRARQIRRLAAELPIESIVLETDAPDIAPAWLSDDQFGEQHKARNTPAEVVGVARVMA
HHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCHHCHHHHCCCCHHHHHHHHHHHH
ELRGVSERELADTMWRNSVAALPRLAAFADVMAPR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]