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The map label for this gene is nlpD [H]

Identifier: 94309982

GI number: 94309982

Start: 1126456

End: 1127178

Strand: Direct

Name: nlpD [H]

Synonym: Rmet_1037

Alternate gene names: 94309982

Gene position: 1126456-1127178 (Clockwise)

Preceding gene: 94309976

Following gene: 94309985

Centisome position: 28.68

GC content: 67.63

Gene sequence:

>723_bases
ATGAATCGAACGCACCACGCCAATCTGCAGACCCGCCGCCGTGCCCTGGGCGCGCTCGGCAGCCTCGCCGCGATTTCCCT
GTCCGCCCTGCTGGCAGCCTGCGGCACCACGCCGACCGAGCCGGCTCCGGACGGCTTCTACCGCGTCGAGCGTGGCGATA
CGCTGTATTCGATCGCGCGCCGGAACAAGCGCTCGGTGTCCGAACTGGCACGCTGGAACAATATGTCGAACACCAACCAG
ATCGAGGTTGGGCAACTGATTCGCGTTCGTCCGCCCGGCGGGGCCTCCACATCGGCGGCGACGACGCCGCAGTCCGACAA
GCCCGCGCGTCCCGTCCAGGACATGCCGTCCGCCAAGCCGCCGGCCAGTTCGATCAGCCTGCAATGGCCAGCCGATGGCC
GTGTCTCGGGCCGTTTCGCGCCGCCGGCGGAGAAGGGAATGCGCATCGAGGTACCGGCTGGCGGCAAGGTCCGCGCGGCC
GCGCCGGGCTGGGCGATTCACGTCGGCACGCTGCGTGGCTACGGCATGTTGGTCATCGTCAAGCACAACGACGACTGGCT
GACCGTCTACGGCAACCTGGACAAGCCGCTGGTCAAGGAGGGCGATCGCGTTACCGCTGGTCAGGAGATTGGCAGCATGG
CGCAGGCCGCCGAACTGCATTTCGAGGTGCGCGGCAACGGTCGGCCGCTCAATCCGGCGAATTATCTGCCTTCTCGGGGC
TAG

Upstream 100 bases:

>100_bases
CAGCGAACGGTCTATTCGCGGAGCCTTCTCGCCGCTTCGGCGACAATAACGCCCGAACCGCGCCCACCCCGGCGCCATTT
TTCAGGAGTAATTCCGGCGC

Downstream 100 bases:

>100_bases
GGGGTAAGAGCCGCCTGTTAGGCGGTTCGCTTCCCTCTCCCACAGGCGGCAGAGGAGAAAACAAGCGGCTGCCCTTACTG
CGCGTGCTCGATCACCAGTT

Product: putative peptidase, M23B subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNRTHHANLQTRRRALGALGSLAAISLSALLAACGTTPTEPAPDGFYRVERGDTLYSIARRNKRSVSELARWNNMSNTNQ
IEVGQLIRVRPPGGASTSAATTPQSDKPARPVQDMPSAKPPASSISLQWPADGRVSGRFAPPAEKGMRIEVPAGGKVRAA
APGWAIHVGTLRGYGMLVIVKHNDDWLTVYGNLDKPLVKEGDRVTAGQEIGSMAQAAELHFEVRGNGRPLNPANYLPSRG

Sequences:

>Translated_240_residues
MNRTHHANLQTRRRALGALGSLAAISLSALLAACGTTPTEPAPDGFYRVERGDTLYSIARRNKRSVSELARWNNMSNTNQ
IEVGQLIRVRPPGGASTSAATTPQSDKPARPVQDMPSAKPPASSISLQWPADGRVSGRFAPPAEKGMRIEVPAGGKVRAA
APGWAIHVGTLRGYGMLVIVKHNDDWLTVYGNLDKPLVKEGDRVTAGQEIGSMAQAAELHFEVRGNGRPLNPANYLPSRG
>Mature_240_residues
MNRTHHANLQTRRRALGALGSLAAISLSALLAACGTTPTEPAPDGFYRVERGDTLYSIARRNKRSVSELARWNNMSNTNQ
IEVGQLIRVRPPGGASTSAATTPQSDKPARPVQDMPSAKPPASSISLQWPADGRVSGRFAPPAEKGMRIEVPAGGKVRAA
APGWAIHVGTLRGYGMLVIVKHNDDWLTVYGNLDKPLVKEGDRVTAGQEIGSMAQAAELHFEVRGNGRPLNPANYLPSRG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=240, Percent_Identity=36.6666666666667, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=41.1764705882353, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87082297, Length=118, Percent_Identity=33.0508474576271, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 25673; Mature: 25673

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTHHANLQTRRRALGALGSLAAISLSALLAACGTTPTEPAPDGFYRVERGDTLYSIAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
RNKRSVSELARWNNMSNTNQIEVGQLIRVRPPGGASTSAATTPQSDKPARPVQDMPSAKP
CCHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
PASSISLQWPADGRVSGRFAPPAEKGMRIEVPAGGKVRAAAPGWAIHVGTLRGYGMLVIV
CCCCEEEECCCCCCCCCCCCCCHHCCCEEEECCCCEEEECCCCCEEEEEEECCCEEEEEE
KHNDDWLTVYGNLDKPLVKEGDRVTAGQEIGSMAQAAELHFEVRGNGRPLNPANYLPSRG
EECCCEEEEEECCCCHHHHCCCCEECHHHHHHHHHHEEEEEEECCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MNRTHHANLQTRRRALGALGSLAAISLSALLAACGTTPTEPAPDGFYRVERGDTLYSIAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
RNKRSVSELARWNNMSNTNQIEVGQLIRVRPPGGASTSAATTPQSDKPARPVQDMPSAKP
CCHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
PASSISLQWPADGRVSGRFAPPAEKGMRIEVPAGGKVRAAAPGWAIHVGTLRGYGMLVIV
CCCCEEEECCCCCCCCCCCCCCHHCCCEEEECCCCEEEECCCCCEEEEEEECCCEEEEEE
KHNDDWLTVYGNLDKPLVKEGDRVTAGQEIGSMAQAAELHFEVRGNGRPLNPANYLPSRG
EECCCEEEEEECCCCHHHHCCCCEECHHHHHHHHHHEEEEEEECCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]