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The map label for this gene is ycdC [C]

Identifier: 94309961

GI number: 94309961

Start: 1105662

End: 1106294

Strand: Direct

Name: ycdC [C]

Synonym: Rmet_1016

Alternate gene names: 94309961

Gene position: 1105662-1106294 (Clockwise)

Preceding gene: 94309958

Following gene: 94309964

Centisome position: 28.15

GC content: 62.24

Gene sequence:

>633_bases
ATGTCAAACGAGCCAAGAACCAAGCGGGACCCCGAGGGCACGCGCCGGCGCATTCTGGCTGCGGCCACGGAAGAGTTTGC
CAAGGGCGGGCTGGCCGGCGCGCGCGTCGACCAGATCGCACGCCGTGCCGAGACCAACGAGCGGATGCTGTATTACTACT
ACGGCAGCAAGGAGGGCTTGTTCCTGGCGGTGCTCGAAAAGCAGTATGCGGAATTTCGCGCGGACGAGGAGCGTCTCCAC
ATCACCGACGAAGACCCGGTTGCCGCCGTCCGCACGCTGGCCCGCTTCGTCTGGGACTGGTATTACAAGCATCCGGAGTT
TATCCGGCTGGTGAACAGCGAGAACCTGCACGAGGCGCGGCACCTGAAGAAGTCCGCGCAATTGCATCAGCTCGTCAACC
CGGTGGTCGACGTGCTGGCCGACATCATCAAGCGAGGACAGAAGCGGGGCCTGTTCCGCGATGACATCGACGTGCCGCAG
TTCTATCTGACCATCTCGGCGCTCGGCTATTACGTGCTGTCGAATCGTTACACGATCAGTGCCGTGATCGGCCGGGACGT
GGCCTCGGAGGAGGAGCACGATCGCTTTGCCGATCTGCATACCGAGATGCTGCTGTCGTACCTGAAGCGCTGA

Upstream 100 bases:

>100_bases
AGAAAAAGCGATGATGCGCTGCGTCACCTGTTCGGGGAGGAGCAGGGCGACGCGACATTGCTGTGTGCCATAATCCGCGC
AACTCACAGACCAGGAATTC

Downstream 100 bases:

>100_bases
AGCTGTCGCCGGCATCGGCAGATAAAAAAACGCCCGCGAGTCTTCGCGGGCGTTTGACTTTGATGCGACGCGCGACGGTC
AGGCGCGGTACTTGCGGATG

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSNEPRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLH
ITDEDPVAAVRTLARFVWDWYYKHPEFIRLVNSENLHEARHLKKSAQLHQLVNPVVDVLADIIKRGQKRGLFRDDIDVPQ
FYLTISALGYYVLSNRYTISAVIGRDVASEEEHDRFADLHTEMLLSYLKR

Sequences:

>Translated_210_residues
MSNEPRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLH
ITDEDPVAAVRTLARFVWDWYYKHPEFIRLVNSENLHEARHLKKSAQLHQLVNPVVDVLADIIKRGQKRGLFRDDIDVPQ
FYLTISALGYYVLSNRYTISAVIGRDVASEEEHDRFADLHTEMLLSYLKR
>Mature_209_residues
SNEPRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGLFLAVLEKQYAEFRADEERLHI
TDEDPVAAVRTLARFVWDWYYKHPEFIRLVNSENLHEARHLKKSAQLHQLVNPVVDVLADIIKRGQKRGLFRDDIDVPQF
YLTISALGYYVLSNRYTISAVIGRDVASEEEHDRFADLHTEMLLSYLKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24464; Mature: 24333

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEPRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCE
FLAVLEKQYAEFRADEERLHITDEDPVAAVRTLARFVWDWYYKHPEFIRLVNSENLHEAR
EHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHEEECCCCCHHHHH
HLKKSAQLHQLVNPVVDVLADIIKRGQKRGLFRDDIDVPQFYLTISALGYYVLSNRYTIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVIGRDVASEEEHDRFADLHTEMLLSYLKR
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNEPRTKRDPEGTRRRILAAATEEFAKGGLAGARVDQIARRAETNERMLYYYYGSKEGL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCE
FLAVLEKQYAEFRADEERLHITDEDPVAAVRTLARFVWDWYYKHPEFIRLVNSENLHEAR
EHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHEEECCCCCHHHHH
HLKKSAQLHQLVNPVVDVLADIIKRGQKRGLFRDDIDVPQFYLTISALGYYVLSNRYTIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
AVIGRDVASEEEHDRFADLHTEMLLSYLKR
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA