Click here to switch to the map view.

The map label for this gene is recN [H]

Identifier: 94309943

GI number: 94309943

Start: 1089190

End: 1090959

Strand: Reverse

Name: recN [H]

Synonym: Rmet_0998

Alternate gene names: 94309943

Gene position: 1090959-1089190 (Counterclockwise)

Preceding gene: 94309944

Following gene: 94309942

Centisome position: 27.77

GC content: 68.53

Gene sequence:

>1770_bases
ATGCTGCGCAGCCTCTCGATCCGCGACTTCGTCATCGTCGACACGCTCGACCTCGACTTCTCCGCCGGCTTTACCGTCTT
CACGGGTGAAACCGGCGCGGGCAAGTCGATCCTCATCGACGCGCTCGCCCTGGTGTTAGGTGAACGGGCCGACGCAGGCG
TGGTCCGCGAAGGCGCGGCACGTGCCAGCATCAGTGCCACCTTCCACACCCACTCAGCGCTGGATGCGTGGCTGGCCGAG
CGCGAACTGTCGAGCGACATGGAAGACGACGACGGCGGCACCGTGCTGCTGCGCCGGACTGTCGACGCCAGCGGCCGCAG
CAAGGCCTTCATCAATGGCGCCGCGGCAACGCTGGCGCAGTTGCGCGAGGTGGGCGACCAGCTCGTCGATATCCACGGCC
AGCACGCGCACCAGTTGCTGCTGCGCCCGGATGCTCAGCGCCAGTTGTTCGACGCCCACGCAGGTCTGACCGAACAATCC
GCCGCCGTGGCCGAGGCCTGGCGTGTGTGGCGCGCCTGCGTCAAGCAGCGCGAGGCGGTCGAGCACCAGTCGCGCGAGAT
GCAACTCGAGCGGGAGCGGCTCGAATGGCAGGTTGGCGAGCTGGACAAGCTCGCGCCGCAGCCGGGCGAATGGGAAGAGA
TCCAGGGCGAATACAACCGCCTGTCACACGCGGCGGGCCTGATCGACGGCAGCCGCGCCGCGCTCGACGCGCTATCCGAA
TCGGACGGCGCAGTGACCTCCGTGCTCAACGGCGTGGTGCACCGGCTCCAGCAACTGGCCGATGTCGACCCGGGCCTGCG
CGACGTGCTGGCCGCGCTCGAGCCGGCGCTGGTGCAGGTCGAGGAAGCCGCGCACTCCCTGAACCGCTATGTCGACCGGC
TCGAACTCGATCCAGAACGGCTGCAGGCCGTGGAAGAGCGCATGCAGGCGCTGCACGCCACCGCCCGCAAGTATCGTCTG
CCGCCGGAACAGCTATCCGACGAGTTGCTGGCCCGCCGCCAGCAACTTGACGACCTCCAGGCCGCCCAGGACATCAACAA
GGTGCTGGCGCGCGAAGCCGCGTCGCGCGCTGCCTACCTGACCCTCGCCCAGCATCTGTCGGGCGCGCGCAAGGTGGCAG
CCGAAGCCTTGTCCGCCGCGGTTACCAATGCGATGCAGGGCCTGTCGATGGCCGGTGGCACGTTCGCCGTGGCATTGCAT
CCGCTCGAGGAAGGCCAGAGCCACGGGCTCGAGCAGATCGAGTTCCTGGTGGCAGGCCATGCCGGCGTGAGCCCCAGGCC
GCTCGCCCGCGTGGCATCGGGTGGCGAACTGGCGCGGATCAGCCTGGCGATTTCGGTCATCACGAGCGAGGCGGCGCCCA
CGCCAACGCTGATCTTCGACGAAGTGGATACGGGGATCGGCGGCGCGGTGGCCGAAGTGGTTGGACGCCGCCTGCAGGAA
CTCGGACGTTCACGGCAGGTACTCTGCGTCACGCACCTGCCACAGGTGGCGGCGCAGGCCGGGACCCACCTGCTGGTCAG
CAAGGAAACCAGCAAGGACGACAGAAAGGCCGGAGGCGACAATGGCGGACCGGTGACGCGGTCGCGCATCCGGACACTCG
ATACGGATGGCCGCGTCCAGGAAACCGCGCGTATGCTTGGTGGTACCACGGTCACTGCCACGACCATGCAACATGCCGAG
GAAATGCTGGCGCAAGGCACCAAGGCAGCCCAAGCGGCCAACTCGCCGCGCGAAGCCAGTGGCAAGCGCCCGCGCCGCGC
GGCCGGCTGA

Upstream 100 bases:

>100_bases
CCGAAGACAACCGGCTCTGATCCGCAGACGCCTCAACGTTCCGTCCTGATCCTCGTTACCCGACCTTACCGCCCTTACCC
GCCACCGCTCACCGCCCACG

Downstream 100 bases:

>100_bases
TTCCGGCACGCCGAACCACACAGGAGTTTCAAACCGATGACCCATGGCAAGTCGCCATCGCTCCACCGCCGCGTCGTCGC
GGCCACCTTTGCCGCGCTGG

Product: recombination and repair protein

Products: NA

Alternate protein names: Recombination protein N [H]

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MLRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGERADAGVVREGAARASISATFHTHSALDAWLAE
RELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAATLAQLREVGDQLVDIHGQHAHQLLLRPDAQRQLFDAHAGLTEQS
AAVAEAWRVWRACVKQREAVEHQSREMQLERERLEWQVGELDKLAPQPGEWEEIQGEYNRLSHAAGLIDGSRAALDALSE
SDGAVTSVLNGVVHRLQQLADVDPGLRDVLAALEPALVQVEEAAHSLNRYVDRLELDPERLQAVEERMQALHATARKYRL
PPEQLSDELLARRQQLDDLQAAQDINKVLAREAASRAAYLTLAQHLSGARKVAAEALSAAVTNAMQGLSMAGGTFAVALH
PLEEGQSHGLEQIEFLVAGHAGVSPRPLARVASGGELARISLAISVITSEAAPTPTLIFDEVDTGIGGAVAEVVGRRLQE
LGRSRQVLCVTHLPQVAAQAGTHLLVSKETSKDDRKAGGDNGGPVTRSRIRTLDTDGRVQETARMLGGTTVTATTMQHAE
EMLAQGTKAAQAANSPREASGKRPRRAAG

Sequences:

>Translated_589_residues
MLRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGERADAGVVREGAARASISATFHTHSALDAWLAE
RELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAATLAQLREVGDQLVDIHGQHAHQLLLRPDAQRQLFDAHAGLTEQS
AAVAEAWRVWRACVKQREAVEHQSREMQLERERLEWQVGELDKLAPQPGEWEEIQGEYNRLSHAAGLIDGSRAALDALSE
SDGAVTSVLNGVVHRLQQLADVDPGLRDVLAALEPALVQVEEAAHSLNRYVDRLELDPERLQAVEERMQALHATARKYRL
PPEQLSDELLARRQQLDDLQAAQDINKVLAREAASRAAYLTLAQHLSGARKVAAEALSAAVTNAMQGLSMAGGTFAVALH
PLEEGQSHGLEQIEFLVAGHAGVSPRPLARVASGGELARISLAISVITSEAAPTPTLIFDEVDTGIGGAVAEVVGRRLQE
LGRSRQVLCVTHLPQVAAQAGTHLLVSKETSKDDRKAGGDNGGPVTRSRIRTLDTDGRVQETARMLGGTTVTATTMQHAE
EMLAQGTKAAQAANSPREASGKRPRRAAG
>Mature_589_residues
MLRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGERADAGVVREGAARASISATFHTHSALDAWLAE
RELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAATLAQLREVGDQLVDIHGQHAHQLLLRPDAQRQLFDAHAGLTEQS
AAVAEAWRVWRACVKQREAVEHQSREMQLERERLEWQVGELDKLAPQPGEWEEIQGEYNRLSHAAGLIDGSRAALDALSE
SDGAVTSVLNGVVHRLQQLADVDPGLRDVLAALEPALVQVEEAAHSLNRYVDRLELDPERLQAVEERMQALHATARKYRL
PPEQLSDELLARRQQLDDLQAAQDINKVLAREAASRAAYLTLAQHLSGARKVAAEALSAAVTNAMQGLSMAGGTFAVALH
PLEEGQSHGLEQIEFLVAGHAGVSPRPLARVASGGELARISLAISVITSEAAPTPTLIFDEVDTGIGGAVAEVVGRRLQE
LGRSRQVLCVTHLPQVAAQAGTHLLVSKETSKDDRKAGGDNGGPVTRSRIRTLDTDGRVQETARMLGGTTVTATTMQHAE
EMLAQGTKAAQAANSPREASGKRPRRAAG

Specific function: May be involved in recombinational repair of damaged DNA [H]

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family [H]

Homologues:

Organism=Escherichia coli, GI48994901, Length=576, Percent_Identity=42.8819444444444, Blast_Score=405, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004604
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 63121; Mature: 63121

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGERADAGVVREGAA
CCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCC
RASISATFHTHSALDAWLAERELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAATLAQ
HHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
LREVGDQLVDIHGQHAHQLLLRPDAQRQLFDAHAGLTEQSAAVAEAWRVWRACVKQREAV
HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EHQSREMQLERERLEWQVGELDKLAPQPGEWEEIQGEYNRLSHAAGLIDGSRAALDALSE
HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
SDGAVTSVLNGVVHRLQQLADVDPGLRDVLAALEPALVQVEEAAHSLNRYVDRLELDPER
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LQAVEERMQALHATARKYRLPPEQLSDELLARRQQLDDLQAAQDINKVLAREAASRAAYL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAQHLSGARKVAAEALSAAVTNAMQGLSMAGGTFAVALHPLEEGQSHGLEQIEFLVAGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCCHHHHHHHHCCC
AGVSPRPLARVASGGELARISLAISVITSEAAPTPTLIFDEVDTGIGGAVAEVVGRRLQE
CCCCCCHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
LGRSRQVLCVTHLPQVAAQAGTHLLVSKETSKDDRKAGGDNGGPVTRSRIRTLDTDGRVQ
HCCCCCEEEEHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHH
ETARMLGGTTVTATTMQHAEEMLAQGTKAAQAANSPREASGKRPRRAAG
HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MLRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGERADAGVVREGAA
CCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCC
RASISATFHTHSALDAWLAERELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAATLAQ
HHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
LREVGDQLVDIHGQHAHQLLLRPDAQRQLFDAHAGLTEQSAAVAEAWRVWRACVKQREAV
HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EHQSREMQLERERLEWQVGELDKLAPQPGEWEEIQGEYNRLSHAAGLIDGSRAALDALSE
HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
SDGAVTSVLNGVVHRLQQLADVDPGLRDVLAALEPALVQVEEAAHSLNRYVDRLELDPER
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LQAVEERMQALHATARKYRLPPEQLSDELLARRQQLDDLQAAQDINKVLAREAASRAAYL
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAQHLSGARKVAAEALSAAVTNAMQGLSMAGGTFAVALHPLEEGQSHGLEQIEFLVAGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHCCHHHHHHHHCCC
AGVSPRPLARVASGGELARISLAISVITSEAAPTPTLIFDEVDTGIGGAVAEVVGRRLQE
CCCCCCHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
LGRSRQVLCVTHLPQVAAQAGTHLLVSKETSKDDRKAGGDNGGPVTRSRIRTLDTDGRVQ
HCCCCCEEEEHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHH
ETARMLGGTTVTATTMQHAEEMLAQGTKAAQAANSPREASGKRPRRAAG
HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3037486; 9205837; 9278503 [H]