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The map label for this gene is 94309940

Identifier: 94309940

GI number: 94309940

Start: 1086234

End: 1086848

Strand: Direct

Name: 94309940

Synonym: Rmet_0995

Alternate gene names: NA

Gene position: 1086234-1086848 (Clockwise)

Preceding gene: 94309939

Following gene: 94309945

Centisome position: 27.65

GC content: 68.78

Gene sequence:

>615_bases
TTGGTGAAGGCTGAGCGCGCCTTGCCGGGCTGGCCGGCCATGCTCGCCGCAGTGGCGGGTGTGGCGGCGTTGGCCGCGTT
GTTCACGTTTGTGCCGTGGATGCACGCGCACGGCCTCTATCTGCGCGATGCCGTGCGGCTAGAGGGTCAATGGTGGCGCC
TGGTCACCGCGATGTGGGTGCACCTCGACACCAGACACTATCTCTCCGATGTTGCCGCCACAGCCGGGCTCATGCTGTTG
GCCGGGCGCGAGGCGCGGGTGCGTGAGTCGCTGACGGTGCTGGTGGTCTGCGGACTGGCCGCCCAGTTGGCGTTGCTCGC
GATGCCGGCGGTAGGTTGGTATGGCGGACTGTCTGGGGCTACACACGGGCTTGCGCTATGGACGGCGTTGCGGCTGCTGC
AGGCACCCGGCTGGTCGCGCCTGATTGGCGTGGTGACGTGCGTGATCGTGCTGGGCAAGGTCTGGCTCGAACAGTCGTGG
CTCGCGGCCGTGGTGTTCGATCCGTCGTGGGGGTTCGGCGTGGTGCGCGGCGCGCACGCGGCGGGCGCCGTGGCGGGATT
GGGCTGCTGGTTGCTGCAGGAATGGTGGGTGGCGCGTGGGAAGCGTGAAGGATAG

Upstream 100 bases:

>100_bases
CAGCACAAGCTGCGGCTCGATGGGTTCGACCAGGCGCGGGTGCCACCGGAGAGCGTGCGCGAACAGGCCACGCAGGTGCG
CACTCTGTGGCGCGCGGTAT

Downstream 100 bases:

>100_bases
TTGAGCGGTTGTCGCCCTTCCAGCCAGCCGGCGAGCAGCGCAAATTGCCAGCCTTCGATTTTGATACTCCCGCGGTGTTC
TGCCGCGACTCTGCTGGCAG

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MVKAERALPGWPAMLAAVAGVAALAALFTFVPWMHAHGLYLRDAVRLEGQWWRLVTAMWVHLDTRHYLSDVAATAGLMLL
AGREARVRESLTVLVVCGLAAQLALLAMPAVGWYGGLSGATHGLALWTALRLLQAPGWSRLIGVVTCVIVLGKVWLEQSW
LAAVVFDPSWGFGVVRGAHAAGAVAGLGCWLLQEWWVARGKREG

Sequences:

>Translated_204_residues
MVKAERALPGWPAMLAAVAGVAALAALFTFVPWMHAHGLYLRDAVRLEGQWWRLVTAMWVHLDTRHYLSDVAATAGLMLL
AGREARVRESLTVLVVCGLAAQLALLAMPAVGWYGGLSGATHGLALWTALRLLQAPGWSRLIGVVTCVIVLGKVWLEQSW
LAAVVFDPSWGFGVVRGAHAAGAVAGLGCWLLQEWWVARGKREG
>Mature_204_residues
MVKAERALPGWPAMLAAVAGVAALAALFTFVPWMHAHGLYLRDAVRLEGQWWRLVTAMWVHLDTRHYLSDVAATAGLMLL
AGREARVRESLTVLVVCGLAAQLALLAMPAVGWYGGLSGATHGLALWTALRLLQAPGWSRLIGVVTCVIVLGKVWLEQSW
LAAVVFDPSWGFGVVRGAHAAGAVAGLGCWLLQEWWVARGKREG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21983; Mature: 21983

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKAERALPGWPAMLAAVAGVAALAALFTFVPWMHAHGLYLRDAVRLEGQWWRLVTAMWV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
HLDTRHYLSDVAATAGLMLLAGREARVRESLTVLVVCGLAAQLALLAMPAVGWYGGLSGA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THGLALWTALRLLQAPGWSRLIGVVTCVIVLGKVWLEQSWLAAVVFDPSWGFGVVRGAHA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCHH
AGAVAGLGCWLLQEWWVARGKREG
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVKAERALPGWPAMLAAVAGVAALAALFTFVPWMHAHGLYLRDAVRLEGQWWRLVTAMWV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
HLDTRHYLSDVAATAGLMLLAGREARVRESLTVLVVCGLAAQLALLAMPAVGWYGGLSGA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THGLALWTALRLLQAPGWSRLIGVVTCVIVLGKVWLEQSWLAAVVFDPSWGFGVVRGAHA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCHH
AGAVAGLGCWLLQEWWVARGKREG
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA