| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is gntR [H]
Identifier: 94309813
GI number: 94309813
Start: 947557
End: 949377
Strand: Reverse
Name: gntR [H]
Synonym: Rmet_0868
Alternate gene names: 94309813
Gene position: 949377-947557 (Counterclockwise)
Preceding gene: 94309816
Following gene: 94309812
Centisome position: 24.17
GC content: 66.28
Gene sequence:
>1821_bases ATGCACCCGCCCTCGACGTGCACGATCGTGCCGGCTGGCAGGTGCTCGAAAAAGCACTGGCCGGCAGCCAGCCGGATGGT GCGGGAAACGGGTCCGGGAAATTCGGTCGGTTCGGTCGGTTCGGCGGGCTTGATGAATGACATGGCGTGGCTCCTGGGTC GCAAAATCATGCAAACAAGGCTACCGAGCCGCCCGCCTTGCCAACAGGCACAAGCCATCGCAAGCGCAACCAGAACAGAT GTCAAACTTGCGCCCTGTTACGATACAGAGACACCGCATCTGTATCTGTTCCACTTCACCCCATCGCGCGAAGATGCCCC CATGAACGCCAACCTCGCCGCCAACCTCGCCGCCAACCTCGCCGCCAGCCCTGCCCCCGCCGCATCGCCTCAATCCTCCG CCCCGCTCTACCAGCAGGTGGCTGGCCATTATCGGCAGGCGATTTCGGTGGGCACGCTGGCGCCGGGTGACCGGATGCCG TCCGTGCGTTCGCTGATGGGGCTGCACGACGTGAGCCTGTCCACGGCGCTCCAGGCCTGCCGCGAGCTTGAGGCGGCCGG CCTGCTCGAAGCGCGGCCGCGCTCGGGCTATTTCGTGCGTGCTCCTGCGCGGCCCTCGCTGGCCCCGATCGAAGAACCGG CCACCGGATTGCCGGATCCCGCGCAGTACGTCGGCATCCACCAGCGCATCTCCGCAATCCTGGCGCGCGGCCAGCATTAC CGGATCAACTTCGGCGGTGCCTGCGGGGCGCCGGAGCTGTATCCGGCGGCCGCATTGCGCAATGCCGCCACGCGGGCACT GCGGCGATACCCAATGCTCTTTGGCAGTTCGGTCGACTTCGACGGCCACCCCGCGTTTCGCGCGGCATTGGCCAGGCACG CGTTGCGCGCGCGGATCAACGTCGCGCCCGAGGACATCGTGGTCACACACGGCTGCACCGAAGCGCTGACGCTGGCCCTG CGGGCCGTGGCGAACCCGGGCGATGTCATCGCCGTGGAATCACCGACGTACTACGGCCTGCTGCAGATTCTCGAAAGCCT GGGAATGCGTGCGCTCGAGATTCCTTGCAGCCCGCAGACCGGCATGTCGCTCGAAGCGCTGGATCTGGCTGCCCAGACCT ACGACAACATCAAGGCCGTCTGCGTGGTGCCGAACCTGCAGAATCCGCTCGGCTGCGTCATGCCGGACACGCACAAACAG CGCTTGGTGAACTGGTGCGCCACACGCGGTCTCACGCTGATCGAAGACGACTGCTGCTCGGCCACCTTCGACGACGAAGT GCCGCTGACGGCCGCCAAGGCATGGGACACCACGGGCTCCGTGATCTACTGCGGGTCGCTCCATAAGATCCTGGCGCCCG GAATGCGGCTCGGCTGGATCACGGCGGGCAAGTGGCAGGCGCGCGTGGAGATGCTCAAGTTCGGCCTGTCGCGCCCGAAC GAGATGCTGACGCAGATCGCCGTGGCCGAGTTCATGGGCACGGGGGCATTCGAGCGTCACCTGCGTCGCCTGCGCACCCA GTTGCGAACCCAGCGCGAATGGATGGCCCAGAGAATCGCGACCACCTTCCCGTCAGGCACCCGCCTGACGCTGCCGCGCG GTGGGCTGCATCTCTGGGTGGAAATGCCCCAGTCGATCTCGTCGGAAGCGGTCTTCGAACAGGCGCTGGCCGAGGGCATC CGGGTGATGCCGGGCGCCATGTTCTCGAACTCGAATCGCTTCAATCACTACCTGCGGCTGAACTGCGGCATTCCTCGATC TCCGGAAATCGAGCGCGCGCTCGATACCGTGGCGGGCGTGGTTCGGCGCATGGCCGCCTGA
Upstream 100 bases:
>100_bases CCAACCTGTGACTTGGATCACTTGCACGCCCCCGGAATGCAGCGTGTACGCGGCCTGGCCGATATCGCTGGCCAGCCAGC ACGGCGCGGTGGTCACGACA
Downstream 100 bases:
>100_bases ACGTGGCGCCGATGCCAACGCCAGCATCGTTCTTGCGAGATTTCTTCCCCGATTCGGGCACGCTCGCCTATCCTATTGCG CGATACGCCGAACACAAAAA
Product: regulatory protein GntR, HTH:Aminotransferase, class I and II
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MHPPSTCTIVPAGRCSKKHWPAASRMVRETGPGNSVGSVGSAGLMNDMAWLLGRKIMQTRLPSRPPCQQAQAIASATRTD VKLAPCYDTETPHLYLFHFTPSREDAPMNANLAANLAANLAASPAPAASPQSSAPLYQQVAGHYRQAISVGTLAPGDRMP SVRSLMGLHDVSLSTALQACRELEAAGLLEARPRSGYFVRAPARPSLAPIEEPATGLPDPAQYVGIHQRISAILARGQHY RINFGGACGAPELYPAAALRNAATRALRRYPMLFGSSVDFDGHPAFRAALARHALRARINVAPEDIVVTHGCTEALTLAL RAVANPGDVIAVESPTYYGLLQILESLGMRALEIPCSPQTGMSLEALDLAAQTYDNIKAVCVVPNLQNPLGCVMPDTHKQ RLVNWCATRGLTLIEDDCCSATFDDEVPLTAAKAWDTTGSVIYCGSLHKILAPGMRLGWITAGKWQARVEMLKFGLSRPN EMLTQIAVAEFMGTGAFERHLRRLRTQLRTQREWMAQRIATTFPSGTRLTLPRGGLHLWVEMPQSISSEAVFEQALAEGI RVMPGAMFSNSNRFNHYLRLNCGIPRSPEIERALDTVAGVVRRMAA
Sequences:
>Translated_606_residues MHPPSTCTIVPAGRCSKKHWPAASRMVRETGPGNSVGSVGSAGLMNDMAWLLGRKIMQTRLPSRPPCQQAQAIASATRTD VKLAPCYDTETPHLYLFHFTPSREDAPMNANLAANLAANLAASPAPAASPQSSAPLYQQVAGHYRQAISVGTLAPGDRMP SVRSLMGLHDVSLSTALQACRELEAAGLLEARPRSGYFVRAPARPSLAPIEEPATGLPDPAQYVGIHQRISAILARGQHY RINFGGACGAPELYPAAALRNAATRALRRYPMLFGSSVDFDGHPAFRAALARHALRARINVAPEDIVVTHGCTEALTLAL RAVANPGDVIAVESPTYYGLLQILESLGMRALEIPCSPQTGMSLEALDLAAQTYDNIKAVCVVPNLQNPLGCVMPDTHKQ RLVNWCATRGLTLIEDDCCSATFDDEVPLTAAKAWDTTGSVIYCGSLHKILAPGMRLGWITAGKWQARVEMLKFGLSRPN EMLTQIAVAEFMGTGAFERHLRRLRTQLRTQREWMAQRIATTFPSGTRLTLPRGGLHLWVEMPQSISSEAVFEQALAEGI RVMPGAMFSNSNRFNHYLRLNCGIPRSPEIERALDTVAGVVRRMAA >Mature_606_residues MHPPSTCTIVPAGRCSKKHWPAASRMVRETGPGNSVGSVGSAGLMNDMAWLLGRKIMQTRLPSRPPCQQAQAIASATRTD VKLAPCYDTETPHLYLFHFTPSREDAPMNANLAANLAANLAASPAPAASPQSSAPLYQQVAGHYRQAISVGTLAPGDRMP SVRSLMGLHDVSLSTALQACRELEAAGLLEARPRSGYFVRAPARPSLAPIEEPATGLPDPAQYVGIHQRISAILARGQHY RINFGGACGAPELYPAAALRNAATRALRRYPMLFGSSVDFDGHPAFRAALARHALRARINVAPEDIVVTHGCTEALTLAL RAVANPGDVIAVESPTYYGLLQILESLGMRALEIPCSPQTGMSLEALDLAAQTYDNIKAVCVVPNLQNPLGCVMPDTHKQ RLVNWCATRGLTLIEDDCCSATFDDEVPLTAAKAWDTTGSVIYCGSLHKILAPGMRLGWITAGKWQARVEMLKFGLSRPN EMLTQIAVAEFMGTGAFERHLRRLRTQLRTQREWMAQRIATTFPSGTRLTLPRGGLHLWVEMPQSISSEAVFEQALAEGI RVMPGAMFSNSNRFNHYLRLNCGIPRSPEIERALDTVAGVVRRMAA
Specific function: Unknown
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=412, Percent_Identity=21.8446601941748, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI33469970, Length=412, Percent_Identity=21.8446601941748, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI4507369, Length=160, Percent_Identity=28.75, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1790797, Length=471, Percent_Identity=33.3333333333333, Blast_Score=270, Evalue=2e-73, Organism=Escherichia coli, GI1787710, Length=475, Percent_Identity=33.0526315789474, Blast_Score=247, Evalue=1e-66,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000524 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - InterPro: IPR011991 [H]
Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 65633; Mature: 65633
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPPSTCTIVPAGRCSKKHWPAASRMVRETGPGNSVGSVGSAGLMNDMAWLLGRKIMQTR CCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC LPSRPPCQQAQAIASATRTDVKLAPCYDTETPHLYLFHFTPSREDAPMNANLAANLAANL CCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH AASPAPAASPQSSAPLYQQVAGHYRQAISVGTLAPGDRMPSVRSLMGLHDVSLSTALQAC CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RELEAAGLLEARPRSGYFVRAPARPSLAPIEEPATGLPDPAQYVGIHQRISAILARGQHY HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE RINFGGACGAPELYPAAALRNAATRALRRYPMLFGSSVDFDGHPAFRAALARHALRARIN EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC VAPEDIVVTHGCTEALTLALRAVANPGDVIAVESPTYYGLLQILESLGMRALEIPCSPQT CCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCC GMSLEALDLAAQTYDNIKAVCVVPNLQNPLGCVMPDTHKQRLVNWCATRGLTLIEDDCCS CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC ATFDDEVPLTAAKAWDTTGSVIYCGSLHKILAPGMRLGWITAGKWQARVEMLKFGLSRPN CCCCCCCCCEEHHCCCCCCCEEEECCHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCHH EMLTQIAVAEFMGTGAFERHLRRLRTQLRTQREWMAQRIATTFPSGTRLTLPRGGLHLWV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEE EMPQSISSEAVFEQALAEGIRVMPGAMFSNSNRFNHYLRLNCGIPRSPEIERALDTVAGV ECCHHCCHHHHHHHHHHCCHHCCCCHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH VRRMAA HHHHCC >Mature Secondary Structure MHPPSTCTIVPAGRCSKKHWPAASRMVRETGPGNSVGSVGSAGLMNDMAWLLGRKIMQTR CCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC LPSRPPCQQAQAIASATRTDVKLAPCYDTETPHLYLFHFTPSREDAPMNANLAANLAANL CCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH AASPAPAASPQSSAPLYQQVAGHYRQAISVGTLAPGDRMPSVRSLMGLHDVSLSTALQAC CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH RELEAAGLLEARPRSGYFVRAPARPSLAPIEEPATGLPDPAQYVGIHQRISAILARGQHY HHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE RINFGGACGAPELYPAAALRNAATRALRRYPMLFGSSVDFDGHPAFRAALARHALRARIN EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC VAPEDIVVTHGCTEALTLALRAVANPGDVIAVESPTYYGLLQILESLGMRALEIPCSPQT CCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCC GMSLEALDLAAQTYDNIKAVCVVPNLQNPLGCVMPDTHKQRLVNWCATRGLTLIEDDCCS CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCC ATFDDEVPLTAAKAWDTTGSVIYCGSLHKILAPGMRLGWITAGKWQARVEMLKFGLSRPN CCCCCCCCCEEHHCCCCCCCEEEECCHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCHH EMLTQIAVAEFMGTGAFERHLRRLRTQLRTQREWMAQRIATTFPSGTRLTLPRGGLHLWV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEE EMPQSISSEAVFEQALAEGIRVMPGAMFSNSNRFNHYLRLNCGIPRSPEIERALDTVAGV ECCHHCCHHHHHHHHHHCCHHCCCCHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH VRRMAA HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]