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The map label for this gene is yngJ [H]

Identifier: 94309789

GI number: 94309789

Start: 924165

End: 925373

Strand: Direct

Name: yngJ [H]

Synonym: Rmet_0844

Alternate gene names: 94309789

Gene position: 924165-925373 (Clockwise)

Preceding gene: 94309788

Following gene: 94309790

Centisome position: 23.53

GC content: 66.0

Gene sequence:

>1209_bases
ATGCAGCTGACACTCACGGAAACGCAGACGTTGCTCGAGAGCAGTGCGCTGCATTGGCTGGCGGGCAATGCCGACGACAT
CCGGCAGGCCAGGGATGCGCGCGCGTACTGGCCAGCGTTCGCGGAAATGGGCTGGCTCGCCCTGCCATTTGCCGACGCCG
ATGGCGGCTTCGGCGGTGGCCCGATCGAGGTGGGGTTGCTCATGCGGGCGTTCGGCCGGTATCGCGTGGCAGCGCCCGGT
TATCGGAGTGGCGTGCTGATGGCCGGCAAGCTCATCGCGGCACTGGGAAGCATGCAGCAGCGCGATACCTGGCTGGCGCC
GCTGATCACAGGCGAGCGCTGTCTTGCGATGGCTCATACGGAGCCGGGGCGTGAAGACCCATGGGCGATGCCGGCGACCA
CGGCGACATGGGATCCGCGCGGCGAGCGATGGACGCTGCGCGGGAAGAAGTCGCTGGTTACGGGTGGGGCGGATGCCGAT
GCTCTGGTGATCAGCGCCTCGATTCATGCTGAGGGCGAACATCCTCGAATCGGCTTGTTCATCGTTCCGTCGGATGCTGA
CGGCATGACGTCGCGCGCATGCCTGGTCGCGGACGGCAGCCGCGCGGCAGACCTCGTGCTCGACGAGGTTTATCTGCCGG
ATGACGCCCGCTTGGGTCAAAACGCTCCCGAGCAGGAGATCGCCGAGGGCTTCATGACGATCGTTGCGGAGGCGTTGGTC
GCTTCCTGCTGGGAAGCTGCTGGCGCGATGCGAGCGGCGCTGGAAGCAACCGTGTCTCACGTCACGCAGCGTGAACAGTT
CGGTCGGCCGCTCTCCGCCCTGCAATCGGTACAGCACGGGCTTGCCGAAATGGCGGTCTGCTGCGAGGAAGCGGGTGCCG
CTTGCGAACTGGCCGCGCTTCGCATCGCTGCGGACCGGCGGCTGGCACGCGATGCGGCATCGCTAGCCCAGTCCTGTACG
GGCCGTGCCGCACGCTATGTTGCCGCCCAGGCCGTGCAGTTGCATGGGGGGATGGGCGTTTCGGAGGAGCTTCACGTAGC
AGCGTTGTTCCGGCTGCTGACGCGCTTCCGGTTGCAGGATGGCCATGCCGACTGGCATTCGATGCAATTGGGGAATGACA
TGTACACCGGCGACTGGCGCATGAGCCAGACCTTGCTTGATCCGGCGACATCTGGCCAGGCTGTGGCGGCATATGCGGAG
GCACACTGA

Upstream 100 bases:

>100_bases
CATCGGCAACACGCCCACGCAGTTCGCAGGTTTCGTCAAGCAGGATGCCGTGAAGTGGGCGAAGGTCGCAAAGGCTTCCG
GCGCGCAGGCGGATTGAGTC

Downstream 100 bases:

>100_bases
TGGATCTGCTGTTGACACCCGAACTTGTCGAGTTTCGGGACACCGTACGCGCTTTCCTGCGCGAGCATCTGCCTGCGGAA
CTGCGTCGGGGGCAGCAACT

Product: putative Acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MQLTLTETQTLLESSALHWLAGNADDIRQARDARAYWPAFAEMGWLALPFADADGGFGGGPIEVGLLMRAFGRYRVAAPG
YRSGVLMAGKLIAALGSMQQRDTWLAPLITGERCLAMAHTEPGREDPWAMPATTATWDPRGERWTLRGKKSLVTGGADAD
ALVISASIHAEGEHPRIGLFIVPSDADGMTSRACLVADGSRAADLVLDEVYLPDDARLGQNAPEQEIAEGFMTIVAEALV
ASCWEAAGAMRAALEATVSHVTQREQFGRPLSALQSVQHGLAEMAVCCEEAGAACELAALRIAADRRLARDAASLAQSCT
GRAARYVAAQAVQLHGGMGVSEELHVAALFRLLTRFRLQDGHADWHSMQLGNDMYTGDWRMSQTLLDPATSGQAVAAYAE
AH

Sequences:

>Translated_402_residues
MQLTLTETQTLLESSALHWLAGNADDIRQARDARAYWPAFAEMGWLALPFADADGGFGGGPIEVGLLMRAFGRYRVAAPG
YRSGVLMAGKLIAALGSMQQRDTWLAPLITGERCLAMAHTEPGREDPWAMPATTATWDPRGERWTLRGKKSLVTGGADAD
ALVISASIHAEGEHPRIGLFIVPSDADGMTSRACLVADGSRAADLVLDEVYLPDDARLGQNAPEQEIAEGFMTIVAEALV
ASCWEAAGAMRAALEATVSHVTQREQFGRPLSALQSVQHGLAEMAVCCEEAGAACELAALRIAADRRLARDAASLAQSCT
GRAARYVAAQAVQLHGGMGVSEELHVAALFRLLTRFRLQDGHADWHSMQLGNDMYTGDWRMSQTLLDPATSGQAVAAYAE
AH
>Mature_402_residues
MQLTLTETQTLLESSALHWLAGNADDIRQARDARAYWPAFAEMGWLALPFADADGGFGGGPIEVGLLMRAFGRYRVAAPG
YRSGVLMAGKLIAALGSMQQRDTWLAPLITGERCLAMAHTEPGREDPWAMPATTATWDPRGERWTLRGKKSLVTGGADAD
ALVISASIHAEGEHPRIGLFIVPSDADGMTSRACLVADGSRAADLVLDEVYLPDDARLGQNAPEQEIAEGFMTIVAEALV
ASCWEAAGAMRAALEATVSHVTQREQFGRPLSALQSVQHGLAEMAVCCEEAGAACELAALRIAADRRLARDAASLAQSCT
GRAARYVAAQAVQLHGGMGVSEELHVAALFRLLTRFRLQDGHADWHSMQLGNDMYTGDWRMSQTLLDPATSGQAVAAYAE
AH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=358, Percent_Identity=27.3743016759777, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI4501857, Length=333, Percent_Identity=28.8288288288288, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI76496475, Length=342, Percent_Identity=24.5614035087719, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI4557235, Length=342, Percent_Identity=24.5614035087719, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI7656849, Length=322, Percent_Identity=24.8447204968944, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI4503943, Length=362, Percent_Identity=28.4530386740331, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI7669494, Length=337, Percent_Identity=28.7833827893175, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=23.3933161953728, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI4557231, Length=326, Percent_Identity=24.8466257668712, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI187960098, Length=326, Percent_Identity=24.8466257668712, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI226958414, Length=351, Percent_Identity=23.6467236467236, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4501859, Length=269, Percent_Identity=23.7918215613383, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87081958, Length=370, Percent_Identity=26.2162162162162, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786223, Length=386, Percent_Identity=24.0932642487047, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17534353, Length=342, Percent_Identity=25.4385964912281, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71985184, Length=344, Percent_Identity=25.2906976744186, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=394, Percent_Identity=22.8426395939086, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71985192, Length=264, Percent_Identity=26.5151515151515, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538396, Length=352, Percent_Identity=24.1477272727273, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=380, Percent_Identity=23.9473684210526, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=354, Percent_Identity=27.4011299435028, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24660351, Length=286, Percent_Identity=26.5734265734266, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21355753, Length=342, Percent_Identity=24.8538011695906, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24646207, Length=382, Percent_Identity=25.130890052356, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19920834, Length=329, Percent_Identity=27.355623100304, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281363737, Length=284, Percent_Identity=23.5915492957746, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24666513, Length=269, Percent_Identity=24.907063197026, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42969; Mature: 42969

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTLTETQTLLESSALHWLAGNADDIRQARDARAYWPAFAEMGWLALPFADADGGFGGG
CEEEHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
PIEVGLLMRAFGRYRVAAPGYRSGVLMAGKLIAALGSMQQRDTWLAPLITGERCLAMAHT
HHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHCHHHCCCHHHHEECCCHHEEEECC
EPGREDPWAMPATTATWDPRGERWTLRGKKSLVTGGADADALVISASIHAEGEHPRIGLF
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEEEEEEEECCCCCCEEEEE
IVPSDADGMTSRACLVADGSRAADLVLDEVYLPDDARLGQNAPEQEIAEGFMTIVAEALV
EEECCCCCCCCCEEEEECCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ASCWEAAGAMRAALEATVSHVTQREQFGRPLSALQSVQHGLAEMAVCCEEAGAACELAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RIAADRRLARDAASLAQSCTGRAARYVAAQAVQLHGGMGVSEELHVAALFRLLTRFRLQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GHADWHSMQLGNDMYTGDWRMSQTLLDPATSGQAVAAYAEAH
CCCCHHHEECCCCEECCCCHHHHHHHCCCCCCCEEEEEECCC
>Mature Secondary Structure
MQLTLTETQTLLESSALHWLAGNADDIRQARDARAYWPAFAEMGWLALPFADADGGFGGG
CEEEHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
PIEVGLLMRAFGRYRVAAPGYRSGVLMAGKLIAALGSMQQRDTWLAPLITGERCLAMAHT
HHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHCHHHCCCHHHHEECCCHHEEEECC
EPGREDPWAMPATTATWDPRGERWTLRGKKSLVTGGADADALVISASIHAEGEHPRIGLF
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEEEEEEEECCCCCCEEEEE
IVPSDADGMTSRACLVADGSRAADLVLDEVYLPDDARLGQNAPEQEIAEGFMTIVAEALV
EEECCCCCCCCCEEEEECCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ASCWEAAGAMRAALEATVSHVTQREQFGRPLSALQSVQHGLAEMAVCCEEAGAACELAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RIAADRRLARDAASLAQSCTGRAARYVAAQAVQLHGGMGVSEELHVAALFRLLTRFRLQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GHADWHSMQLGNDMYTGDWRMSQTLLDPATSGQAVAAYAEAH
CCCCHHHEECCCCEECCCCHHHHHHHCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]