| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is gyrA [H]
Identifier: 94309658
GI number: 94309658
Start: 788534
End: 791227
Strand: Direct
Name: gyrA [H]
Synonym: Rmet_0713
Alternate gene names: 94309658
Gene position: 788534-791227 (Clockwise)
Preceding gene: 335055500
Following gene: 94309659
Centisome position: 20.07
GC content: 61.51
Gene sequence:
>2694_bases ATGGATCAATTCGCCAAAGAAACCCTTCCGGTCTCACTGGAAGAGGAAATGCGCCGCTCATACCTGGATTACGCAATGAG CGTAATCGTGGGGCGCGCGCTTCCCGACGTTCGGGACGGCCTGAAACCGGTACACCGGCGCGTGCTGTTTGCGATGCATG AGCTCAACAACGACTGGAACCGGCCGTACAAGAAGTCGGCCCGTATCGTCGGCGATGTGATTGGTAAATATCACCCGCAC GGCGATACCGCGGTGTACGACACGATCGTGCGCATGGCGCAGAATTTCTCCCTGCGTTACATGCTGGTCGACGGTCAGGG CAACTTCGGTTCGGTGGACGGAGATAACGCGGCGGCAATGCGTTATACCGAAATCCGCCTGTCGAAGATTGCCCATGAAA TGCTTCAGGATATCGACAAGGAAACTGTCGATTTCGAACCGAACTATGACGGTTCGGAGAAAGAGCCTGGCATTTTGCCG GCACGTATTCCGAATCTTCTGATCAATGGTTCGTCGGGTATTGCGGTCGGCATGGCCACCAATATTCCGCCGCATAACCT CAATGAGGTTGTCGATGCCTGTCTGCATCTGCTGCGTAATCCCGATGCCACCGTCGATGAACTGATCGAATTGGTGCCGG CGCCCGATTTTCCGACCGCCGGCATTATCTATGGCATCCAGGGCGTGCGCGAAGGCTACCGCACCGGCCGTGGCCGTGTG GTCATGCGCGCCCGCACGCACTTCGAGGACATCGACCGGGGCCAGCGCCAGGCGATCATCGTTGACGAGCTGCCGTACCA GGTGAACAAGCGGACACTGCTCGAGCGCATTGCCGAGTTGGTGACCGAGAAGAAGGTCGAAGGTATTTCGGACATCCGCG ACGAATCTGACAAGTCAGGTATGCGCGTGGTGATCGAACTCAAGCGCAATGAGGTGCCCGAGGTTGTTCTGAACAACCTA TATAAGAACACCCAGCTCCAGGACACCTTCGGCATGAACATGGTGGCCCTGGTCGATGGTCAGCCGCGCCTGCTGAACCT GCGCCAGATGCTGGATGCGTTCCTGTCGCACCGGCGCGAGGTGGTCACCCGCCGTACCGTGTTCGAGCTGCGCAAGGCGC GCGAGCGCGGTCATGTGCTGGAAGGCCTGGCCGTGGCGCTGGCCAACATCGACGAGTTCATCGCGATCATCAAGGCTGCG CCGACGCCGCCGATCGCGAAGCAGGAGCTGATGTCGAAGCCCTGGGATTCGGGTCTGGTGCGCGAAATGCTGGCACGTGC CGAAAGCGACACTGCGGGCGGCCGCGCATCGTACCGCCCGGATGGTCTGCCGGCTGTGTTCGGCATGCAGCCGGATGGCC TGTATCGACTGTCCGACGGTCAGGCTCAGGAAATCCTGCAAATGCGCCTGCAACGCCTCACGGGGCTTGAGCAGGACAAG ATTGTCCAGGAGTACCGCGAGGTCATGGGCCTGATCGCCGATCTGCTCGACATCCTGGCCCGCCCGGAGCGCATCACGAC GATCATCACCGAAGAGCTTGGAGCGATCCGGGCCGAATTCGGTGACGAGCGCCGTTCGCAGATCGAGCTGAACGCGACCG AACTCGATACCGAGGACCTGATCACGCCGCAGGACATGGTCGTGACGCTGTCGCACTCCGGCTATATGAAGAGCCAGCCG ATTTCCGAGTACCGCGCGCAGAAGCGTGGTGGGCGCGGCAAGCTGGCGACGGCGACGAAGGAAGACGACTGGATCGACAC GCTGTTCGTCGCAAACACGCACGACTACATCCTGTGCTTCTCGAACCGTGGCCGGCTGTACTGGCTGAAGGTCTATGAGG TGCCACAGGGCTCGCGCAATTCGCGTGGACGGCCGATCGTGAACATGTTCCCGCTGGCCGACGGCGAGAAGATCAACGTC ATCCTGCCGGTGCGCCAGTTCGATGCCGAGCACTTCATCTTCATGGCCACGGCGCGTGGCACGGTGAAGAAGACCGTGCT GACTGATTTCTCGAATCCGCGCAAGGCGGGCATCATCGCCGTGGATCTCGATGAGGGCGACTTCCTGATCGGCGCCGCCG TGACCGACGGCCAGCACGACGTCATGCTGTTCTCCGACGCCGGCAAGGCCGTGCGATTCGATGAGAACGACGTGCGTCCG ATGGGCCGGCAGGCACGCGGTGTCCGCGGCATGAACCTCGATGAAGGTCAGGCCGTGATCGCCATGCTGGTTGCGCCGGC CGAATCCGCGGAAACGGAATCGTCGGTGGCAGAGGGAGACGTGTCTCCAGTGGGCAGCGTCCTGACCGCAACCGAGAATG GTTACGGCAAGCGCACTCCGATCTCCGAATACACTCGACACGGACGTGGCACCAAGGGCATGATTGCGATCCAGACGAGC GAGCGCAATGGCCGCGTGGTGGCTGCGGCGCTGGTTTCGCCCGAAGATGAAATCATGCTGATCACGACCGGCGGCGTGCT GATTCGCACCCGCGTGGCCGAAATCCGCGAGATGGGTCGTGCCACGCAGGGTGTGACGTTGATCAACGTCGACGAGGGCA CCAAGCTGTCGGGTCTGCAGCGCATCGTGGAAAGCGACGCGGACAACGGTTCGGGGGCAGAGGAAGGCGAAGCAGCCGAT GATGCCGCGGGCGCCACCGATGCCGGAGCCACTGACGCGGGTGCGAATTCGTAA
Upstream 100 bases:
>100_bases CATGATAGAATGCCATGTTCGCCCGATGCCGTATGCCGGTCTCCGTCATGCGGGAATCGGAGTCCCATTTGCCTAAACCC GCCGCATAAACCACGTCGCA
Downstream 100 bases:
>100_bases TTTGTTGCAACATTGGAACCACGGCCGGAACTCGCCAGACGGCCGTGCGGACTAATCCGGACGTATTTTCCAGGGAGTCA TAATGCTCAAAACCTATCGA
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 897; Mature: 897
Protein sequence:
>897_residues MDQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILP ARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMSKPWDSGLVREMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDK IVQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINV ILPVRQFDAEHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS ERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVESDADNGSGAEEGEAAD DAAGATDAGATDAGANS
Sequences:
>Translated_897_residues MDQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILP ARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMSKPWDSGLVREMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDK IVQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINV ILPVRQFDAEHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS ERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVESDADNGSGAEEGEAAD DAAGATDAGATDAGANS >Mature_897_residues MDQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPH GDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILP ARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRV VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKRNEVPEVVLNNL YKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREVVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAA PTPPIAKQELMSKPWDSGLVREMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDK IVQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQDMVVTLSHSGYMKSQP ISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINV ILPVRQFDAEHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP MGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS ERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRIVESDADNGSGAEEGEAAD DAAGATDAGATDAGANS
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=351, Percent_Identity=27.6353276353276, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI19913408, Length=319, Percent_Identity=27.8996865203762, Blast_Score=96, Evalue=2e-19, Organism=Escherichia coli, GI1788562, Length=880, Percent_Identity=59.4318181818182, Blast_Score=1051, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=775, Percent_Identity=35.4838709677419, Blast_Score=397, Evalue=1e-111, Organism=Caenorhabditis elegans, GI17535065, Length=380, Percent_Identity=24.7368421052632, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI212645657, Length=409, Percent_Identity=24.2053789731051, Blast_Score=75, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212645845, Length=189, Percent_Identity=30.6878306878307, Blast_Score=71, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=352, Percent_Identity=26.9886363636364, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI17136538, Length=352, Percent_Identity=25.2840909090909, Blast_Score=84, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 99077; Mature: 99077
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC RPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC NIPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH VVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHH REMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDK HHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHH IVQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECHHCCCHHHC ITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEHFIFMATARG CCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP CHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTP CCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCHHCHHEEECCCCCCCCCC ISEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGR HHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEHHHHHHHHHHCC ATQGVTLINVDEGTKLSGLQRIVESDADNGSGAEEGEAADDAAGATDAGATDAGANS HHCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC RPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAM CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC NIPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE VMRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSG EEEEHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRRE CEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH VVTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHH REMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDK HHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHCCCCHHH IVQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECHHCCCHHHC ITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCF CCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCEEEEE SNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEHFIFMATARG CCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEHHHCCCCEEEEEEECCC TVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRP CHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEECCCCCCCC MGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRTP CCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCHHCHHEEECCCCCCCCCC ISEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGR HHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCEEEHHHHHHHHHHCC ATQGVTLINVDEGTKLSGLQRIVESDADNGSGAEEGEAADDAAGATDAGATDAGANS HHCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7830580 [H]