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The map label for this gene is ylbK [H]

Identifier: 94309550

GI number: 94309550

Start: 654484

End: 656787

Strand: Reverse

Name: ylbK [H]

Synonym: Rmet_0605

Alternate gene names: 94309550

Gene position: 656787-654484 (Counterclockwise)

Preceding gene: 94309551

Following gene: 94309546

Centisome position: 16.72

GC content: 65.23

Gene sequence:

>2304_bases
ATGTCGAGACTCGTTTCCGGGCCGCGCCGCGCACCGCTGCGCTGGCTGCCCTTGTTTTGCCTGCTCATTGCGGGCCTGTT
CCAGCAGGCCTACGCCGAGTGCAGCGCCAGCCACACCTCCGCCGCCGATGCCGCACGACCGCGCATTGGCCTGGTGCTGT
CCGGCGGCGGCGCACGCGGTTATGCCCACATTGGCGTGCTCAAGGCACTGGAACAGATGCACGTGCCAATCGATTGCATT
GCGGCGACCAGCATGGGGGCGGTGGTCGGCGGACTGTATGCGAGCGGGATTCCGGCAAACGAACTCGACACCCGGCTATC
GCAGATCAACCTGAGCGACATCGTCTTCGACCGTAACGAACGCGCGCACCTGCCGCAGACGCTGCGCGAGGACAGTTTCG
AATACCCGATCGGCCTCTCGGTCGGCTATGGCGACGGCAAGGTCAAGCTGCCCGGCGGGCTGGTGCAGGGCAACCGGCTG
CTGGCACTGCTGCAGGACTGGACGGCCCCGTGGCCCGGCGACATCGATTTCGACAAACTGCCCATTCCATTCCGCACCAT
CGCCACGGACCTCAGCTCGGGTGCGCCCGTAGTGCTCGAGAAAGGGTCCTTGCCGCGCGCAATCCGCGCCAGCGCGGCCG
TGCCGGGCCTGTTCGCGCCGTTCAAGGTGGATGGGCGCACGCTGGTGGACGGTGGCCTGGTCAGCAACCTGCCTGTGCAG
ATGGCGCGCGACATGGGCGCCGATATCGTCATCGCGGTCAATGTGGCCTCGCCACTCGACGACCCCTCCAACCTCGATTC
GCCAGCGGCCGTCACCCAGCAAATGGTGACGATCCTGATGAACCAGAATCTCGCCGCGCAGAAGGCATTGCTGGGTCAGC
GGGATGTGCTGCTGGAACCCGATCTCGGCGATCTGTCGTTCACCGACTTCTCCAATGCGCGCCGTGGCGTGCAGCTTGGC
TACACGGCGGCTGAAGGCATCGCGCCACGGCTGGCCGCGCTCGCGTTGCCGCCCGACGCGTGGGACCAGTACATCGCCGC
CCGGGAAACGCATAGCGCGCGATTCGAGCCCAAGCGCATCGACGCCATCGAGATCCATGCCTCGGGGCGCATTCCGCCCA
CCTACATCAAGCAGTATCTGCGCACGCGCGAAGGCGACACCTATGACGCCGAAGCGATCAACCGCGACCTCTCGCAGCTC
TCCACCACCGGCAATTTCGAAAGCGTGACGCAGGATGTGGTTACCGAGAACGGCCGGTCCGTGCTCAAGATCGACGCGCA
GGAGAAATCGTGGGGGCCGCAGTTCCTGCTCTTCGGCTTCGGCATGTCCACAACGTTCGACGGCAAGGGCGCGTTCAACC
TGCAACTGGGTCACCGCTATCCGTGGCTAACGCAAAGCGGTCTGGAGTGGCGCAACGACATCGTGCTGGGCAGCACCCAG
GCCAAGTGGCACACGGAGCTTCGCCAACCGGTGCTGGACCGGCTGGGGTTCTATATCGCGCCATACCTCGAATACGGCCG
CAAGCACGTCGATATCTACCCCGACAGCAGCCCCACCCGCAGCACCACGCCGCTCACTGCCGTGCGCGTGGACACGGCGC
TGGCAGGCGTCGACCTCGGGTTGCCGATCGGCAGGCTGGGCGAGTTCCGCGTCGGCGCGAACTATCAGCAGGTCCGCTAT
TACTCTGACTATCTGATTGGCGCGTCAAGCAACGGCAAATTCAGTGCCTCGGTGCAGCAGCCGGTGGTACGGGCGGAACT
GACGATCGACCAGCTCGATGACCCGCTCTTTCCGCGCAAGGGCTACTACTTCAATGCGGTGAACCAGCTATCGTTCGGCG
GCACGGACAACAGCTTCGACGACGTCCACGGCAAGGCCCTGTGGGCGGGCAGCTACGGGCGCCATACGCTGAACCTGGCG
GCCGAGGGGGCGATGACCTACAACGACCACCGCACCTCCGGCAGCGTCAGTGGCGGCCTGGGATTCACGCTGGGTGGATT
CCAGCGCCTGTCAGCCTATGCGCCGGACCAGTTCTCGGGCAACTACCTGCTCTACGGCCGCATCACGTACCTGAACGAAC
TGCGTGAATTCGTGCTGCCGGGGCTGCGCACAACGGTGTTCGGCTCCAGCCTCGAAGTGGGCGACGTCTGGCTCAGGCGC
CGCAACTTCGGCAGCGGGCCCTACAAGTCCAGCGCCAGTCTGTTCATCGGCGGCAACAGCGTGATCGGCCCGCTCTACTT
TGGCGTCGCGGCGGCGCCGCAGGGTGTGTGGAATATCTACCTGCAACTGGGCCGCGTGTTCTAG

Upstream 100 bases:

>100_bases
TCCCCGTCCGCCCTGTCGGCGCCAGACGGAGGCATCGCGACGTATTCGCGGCCTGCCTCCGCCCGGCGCTGTCGATCGTT
CCCCTCCCGGCACCGCCATC

Downstream 100 bases:

>100_bases
CCCGCCTGGCGGACCAGCGGCGCATCGCTGTCCGCCGCCGATTCGGGACGGTACTCGACCGCGCGGATGCGGCCGTTGGC
TAGTCGTAGCGTCTGCGTGC

Product: putative Patatin-like phospholipase (fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 767; Mature: 766

Protein sequence:

>767_residues
MSRLVSGPRRAPLRWLPLFCLLIAGLFQQAYAECSASHTSAADAARPRIGLVLSGGGARGYAHIGVLKALEQMHVPIDCI
AATSMGAVVGGLYASGIPANELDTRLSQINLSDIVFDRNERAHLPQTLREDSFEYPIGLSVGYGDGKVKLPGGLVQGNRL
LALLQDWTAPWPGDIDFDKLPIPFRTIATDLSSGAPVVLEKGSLPRAIRASAAVPGLFAPFKVDGRTLVDGGLVSNLPVQ
MARDMGADIVIAVNVASPLDDPSNLDSPAAVTQQMVTILMNQNLAAQKALLGQRDVLLEPDLGDLSFTDFSNARRGVQLG
YTAAEGIAPRLAALALPPDAWDQYIAARETHSARFEPKRIDAIEIHASGRIPPTYIKQYLRTREGDTYDAEAINRDLSQL
STTGNFESVTQDVVTENGRSVLKIDAQEKSWGPQFLLFGFGMSTTFDGKGAFNLQLGHRYPWLTQSGLEWRNDIVLGSTQ
AKWHTELRQPVLDRLGFYIAPYLEYGRKHVDIYPDSSPTRSTTPLTAVRVDTALAGVDLGLPIGRLGEFRVGANYQQVRY
YSDYLIGASSNGKFSASVQQPVVRAELTIDQLDDPLFPRKGYYFNAVNQLSFGGTDNSFDDVHGKALWAGSYGRHTLNLA
AEGAMTYNDHRTSGSVSGGLGFTLGGFQRLSAYAPDQFSGNYLLYGRITYLNELREFVLPGLRTTVFGSSLEVGDVWLRR
RNFGSGPYKSSASLFIGGNSVIGPLYFGVAAAPQGVWNIYLQLGRVF

Sequences:

>Translated_767_residues
MSRLVSGPRRAPLRWLPLFCLLIAGLFQQAYAECSASHTSAADAARPRIGLVLSGGGARGYAHIGVLKALEQMHVPIDCI
AATSMGAVVGGLYASGIPANELDTRLSQINLSDIVFDRNERAHLPQTLREDSFEYPIGLSVGYGDGKVKLPGGLVQGNRL
LALLQDWTAPWPGDIDFDKLPIPFRTIATDLSSGAPVVLEKGSLPRAIRASAAVPGLFAPFKVDGRTLVDGGLVSNLPVQ
MARDMGADIVIAVNVASPLDDPSNLDSPAAVTQQMVTILMNQNLAAQKALLGQRDVLLEPDLGDLSFTDFSNARRGVQLG
YTAAEGIAPRLAALALPPDAWDQYIAARETHSARFEPKRIDAIEIHASGRIPPTYIKQYLRTREGDTYDAEAINRDLSQL
STTGNFESVTQDVVTENGRSVLKIDAQEKSWGPQFLLFGFGMSTTFDGKGAFNLQLGHRYPWLTQSGLEWRNDIVLGSTQ
AKWHTELRQPVLDRLGFYIAPYLEYGRKHVDIYPDSSPTRSTTPLTAVRVDTALAGVDLGLPIGRLGEFRVGANYQQVRY
YSDYLIGASSNGKFSASVQQPVVRAELTIDQLDDPLFPRKGYYFNAVNQLSFGGTDNSFDDVHGKALWAGSYGRHTLNLA
AEGAMTYNDHRTSGSVSGGLGFTLGGFQRLSAYAPDQFSGNYLLYGRITYLNELREFVLPGLRTTVFGSSLEVGDVWLRR
RNFGSGPYKSSASLFIGGNSVIGPLYFGVAAAPQGVWNIYLQLGRVF
>Mature_766_residues
SRLVSGPRRAPLRWLPLFCLLIAGLFQQAYAECSASHTSAADAARPRIGLVLSGGGARGYAHIGVLKALEQMHVPIDCIA
ATSMGAVVGGLYASGIPANELDTRLSQINLSDIVFDRNERAHLPQTLREDSFEYPIGLSVGYGDGKVKLPGGLVQGNRLL
ALLQDWTAPWPGDIDFDKLPIPFRTIATDLSSGAPVVLEKGSLPRAIRASAAVPGLFAPFKVDGRTLVDGGLVSNLPVQM
ARDMGADIVIAVNVASPLDDPSNLDSPAAVTQQMVTILMNQNLAAQKALLGQRDVLLEPDLGDLSFTDFSNARRGVQLGY
TAAEGIAPRLAALALPPDAWDQYIAARETHSARFEPKRIDAIEIHASGRIPPTYIKQYLRTREGDTYDAEAINRDLSQLS
TTGNFESVTQDVVTENGRSVLKIDAQEKSWGPQFLLFGFGMSTTFDGKGAFNLQLGHRYPWLTQSGLEWRNDIVLGSTQA
KWHTELRQPVLDRLGFYIAPYLEYGRKHVDIYPDSSPTRSTTPLTAVRVDTALAGVDLGLPIGRLGEFRVGANYQQVRYY
SDYLIGASSNGKFSASVQQPVVRAELTIDQLDDPLFPRKGYYFNAVNQLSFGGTDNSFDDVHGKALWAGSYGRHTLNLAA
EGAMTYNDHRTSGSVSGGLGFTLGGFQRLSAYAPDQFSGNYLLYGRITYLNELREFVLPGLRTTVFGSSLEVGDVWLRRR
NFGSGPYKSSASLFIGGNSVIGPLYFGVAAAPQGVWNIYLQLGRVF

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Escherichia coli, GI226510936, Length=210, Percent_Identity=34.7619047619048, Blast_Score=101, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI193204778, Length=219, Percent_Identity=31.0502283105023, Blast_Score=73, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=221, Percent_Identity=31.6742081447964, Blast_Score=94, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 83307; Mature: 83176

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLVSGPRRAPLRWLPLFCLLIAGLFQQAYAECSASHTSAADAARPRIGLVLSGGGARG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCC
YAHIGVLKALEQMHVPIDCIAATSMGAVVGGLYASGIPANELDTRLSQINLSDIVFDRNE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEECCCC
RAHLPQTLREDSFEYPIGLSVGYGDGKVKLPGGLVQGNRLLALLQDWTAPWPGDIDFDKL
CCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCEECCCCEEEEHHHCCCCCCCCCCCCCC
PIPFRTIATDLSSGAPVVLEKGSLPRAIRASAAVPGLFAPFKVDGRTLVDGGLVSNLPVQ
CCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEECCCEEECCCCCCCCCHH
MARDMGADIVIAVNVASPLDDPSNLDSPAAVTQQMVTILMNQNLAAQKALLGQRDVLLEP
HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECC
DLGDLSFTDFSNARRGVQLGYTAAEGIAPRLAALALPPDAWDQYIAARETHSARFEPKRI
CCCCCCCCCCCCCCCCEEECCHHHHCCCHHHHHEECCCHHHHHHHHHHCCCCCCCCCCCC
DAIEIHASGRIPPTYIKQYLRTREGDTYDAEAINRDLSQLSTTGNFESVTQDVVTENGRS
CEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCE
VLKIDAQEKSWGPQFLLFGFGMSTTFDGKGAFNLQLGHRYPWLTQSGLEWRNDIVLGSTQ
EEEEECCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCC
AKWHTELRQPVLDRLGFYIAPYLEYGRKHVDIYPDSSPTRSTTPLTAVRVDTALAGVDLG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHCCCCC
LPIGRLGEFRVGANYQQVRYYSDYLIGASSNGKFSASVQQPVVRAELTIDQLDDPLFPRK
CCCCCCCCEEECCCHHHEEEEEEEEEECCCCCCEECHHHCCEEEEEEEHHHCCCCCCCCC
GYYFNAVNQLSFGGTDNSFDDVHGKALWAGSYGRHTLNLAAEGAMTYNDHRTSGSVSGGL
CCEECCCCCEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCC
GFTLGGFQRLSAYAPDQFSGNYLLYGRITYLNELREFVLPGLRTTVFGSSLEVGDVWLRR
CEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHH
RNFGSGPYKSSASLFIGGNSVIGPLYFGVAAAPQGVWNIYLQLGRVF
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SRLVSGPRRAPLRWLPLFCLLIAGLFQQAYAECSASHTSAADAARPRIGLVLSGGGARG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCC
YAHIGVLKALEQMHVPIDCIAATSMGAVVGGLYASGIPANELDTRLSQINLSDIVFDRNE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHEEECCCC
RAHLPQTLREDSFEYPIGLSVGYGDGKVKLPGGLVQGNRLLALLQDWTAPWPGDIDFDKL
CCCCCHHHHHCCCCCCEEEEEECCCCEEECCCCEECCCCEEEEHHHCCCCCCCCCCCCCC
PIPFRTIATDLSSGAPVVLEKGSLPRAIRASAAVPGLFAPFKVDGRTLVDGGLVSNLPVQ
CCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEECCCEEECCCCCCCCCHH
MARDMGADIVIAVNVASPLDDPSNLDSPAAVTQQMVTILMNQNLAAQKALLGQRDVLLEP
HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECC
DLGDLSFTDFSNARRGVQLGYTAAEGIAPRLAALALPPDAWDQYIAARETHSARFEPKRI
CCCCCCCCCCCCCCCCEEECCHHHHCCCHHHHHEECCCHHHHHHHHHHCCCCCCCCCCCC
DAIEIHASGRIPPTYIKQYLRTREGDTYDAEAINRDLSQLSTTGNFESVTQDVVTENGRS
CEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCE
VLKIDAQEKSWGPQFLLFGFGMSTTFDGKGAFNLQLGHRYPWLTQSGLEWRNDIVLGSTQ
EEEEECCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCC
AKWHTELRQPVLDRLGFYIAPYLEYGRKHVDIYPDSSPTRSTTPLTAVRVDTALAGVDLG
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEHHHHHCCCCC
LPIGRLGEFRVGANYQQVRYYSDYLIGASSNGKFSASVQQPVVRAELTIDQLDDPLFPRK
CCCCCCCCEEECCCHHHEEEEEEEEEECCCCCCEECHHHCCEEEEEEEHHHCCCCCCCCC
GYYFNAVNQLSFGGTDNSFDDVHGKALWAGSYGRHTLNLAAEGAMTYNDHRTSGSVSGGL
CCEECCCCCEECCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEEECCCCCCCCCCCCC
GFTLGGFQRLSAYAPDQFSGNYLLYGRITYLNELREFVLPGLRTTVFGSSLEVGDVWLRR
CEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHH
RNFGSGPYKSSASLFIGGNSVIGPLYFGVAAAPQGVWNIYLQLGRVF
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]