| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is htrE [H]
Identifier: 94309519
GI number: 94309519
Start: 614604
End: 617162
Strand: Reverse
Name: htrE [H]
Synonym: Rmet_0574
Alternate gene names: 94309519
Gene position: 617162-614604 (Counterclockwise)
Preceding gene: 94309520
Following gene: 94309516
Centisome position: 15.71
GC content: 61.98
Gene sequence:
>2559_bases ATGCGCACTCGGAAGCCGCGCGCCTCGCGCGCTCTGGCTGCGCGTTGGATCCTGGCCACCGCTCTGCCCACCGCGGTATT TGCTAATGAACCCGGCAAGACGGCCACCATCGCAGCCGTCAAGTTCAATTCAGATTTTCTGAAACGTTCCGATGGCACCA GCGTCGATGTCAGCCGGTTTGCGTTTGGCAACCCCATCTCACCTGGCGACCATGCGGTCGACATCTACCTGAACGGATCG TGGGTTGGTCGAGAGACAGTGCGATTCCGGTCCCGGGACGAGGTTGTCGGCCCATGCATGGACCGATCGCTCATTACCCG GTTGAATCTCGACGAACAGGCGCTGCCACCCGCCAGCCGCAATGCGATAGCGCAGGCCGTCAGTGGCGAATGCACTCGCC CATCGGACATCTCGGAAGACCTCACCTGGTCGTTCAACCTCAATGACCTGCGTCTCGACATCGGCGTGGCGCAGGCATTG TTACGCCGCACGCCGCGCGGCAGCGTCAGCCCAGAGCTCCTGGATGATGGCGTCCCGTCCGCGACGGTCGCCTACAATTT CAACACGTTCCACACTACTGGTAGCTCATCTGTCACTTCTACCTACCTTGGCATCGATTCCGGATTAAACATCGGTGCCT GGCACCTGCGGCAGCGCTCCTCGATGAGTTGGCAGTCCATGGGCCAAAGCACCTACGACTACCAGAACATCGCGACCTAT TTGCAGCGGGATATATCGCGCCTGCGTAGTCAGCTCACCGTTGGCGATGCCTACACGGATGGAGCCGTCTTCGACAGCTT TTCCGTGCGCGGCGTGAATCTGGCCAGCGATGACCGGATGCTTCCTGACTCCGCACGCGGCTATGCGCCACTGGTGCGAG GCGTCGCCCGCTCCAATGCGCGTGTCACGGTCACGCAGAATGGCAACAAGCTCTATGAAACGACCGTGGCGCCAGGACCG TTCGAGATCAAGGATCTCTACGCCACCGGTTATGGCGGCAATCTGCTCGTCACGGTGACAGAAGCCGACGGCAGCCAAAG CAGCTTTACCGTGCCCTATGCATCTGTGGCTCAGCTTCTACGGCCCGGTATCACGCGGTACTCGGCCACGGTTGGGGAGT ACCGCGATGGCTCGCGCACGTCTTCCCGCCGCGAGAAACTGGTCCAGGGTACGGTGCAGCACGGGTTCAACAACTTCGTA ACGGGCTATGCCGGGCTAGTCCTCTCGGAGGGCTACCGGGCGGGCCTGATCGGCGCGGCCTTGAATCTGCCCATTGGCGC ATTCGCGCTGGATGCGACCCATGCCCACGCCTCGATCGACCAGGTTGACAACACCAGCGGACAAAGCGTGCGCCTCAGCT ACAGCAAGTTCGTGCCGTCAACTAGCACGAGTATGTCACTCGCCGCCTATCGCTATGCGACCCGTGGCTTCTGGACGATG AGCGACGCATTCACGGCTCGCGCCAGCGGTGGCAATGCCCGCGCCGTGGACCGCCAGCGCAGCCAGGTCCAACTCACGCT GAATCAGAGTCTCGGAGATCGCTGGGGCAACTTCTATCTCACAGGCACTTCCGCGGAATACTGGAATCGGGGCGGTACTG CGCTGATGTTCCAGGTGGGCTACAGCAACTCGCTGCGTGTGCTGGGACTGCCGATGACCTACAACATCGCGGCCTCACGC CAACGCGAGGCGATGACCGGCCGGTTCACCACCCAGGTTTTCGCCAGCCTCACCGTACCGCTGGGCAAGAGCAGCCACGC CCCGATGCTGTCGTTCGGCGCCACGCATAGTGACAGCCAATCCTCGCAACAGATGCGGCTGAGCGGCACTGCACTCGAGG ACAACGCCTTCACCTATGGCCTGAACGTCGACCGTTCGCCGAACACAACCACCGGCGGTGGCAACGTACAGTACCGGACG CCTTACACCACCGTTTCCGCTTCTGTCAGCGGCGGCGGCGGTTACACGCAATACTCGGGTGGCCTGCAAGGCGCCCTGGT CGCCCACCAAGGAGGCATCACACTTGCCAACTTCCTTGGCGACACCATCGGCATCGTCGAAGCAAAGGGCGCTACCGGCG CGCGCGTCGCCAATGCGACGGGCGTCAGGATCGACGCATTCGGCTACGCCATTGTGCCGTACCTCCAGCCTTACAACATG AACACGATCGAGATAGATCCACGCGGGATACCGCTGGATGTATCGCTGGACGCGACCAGCGCCCAGGTAGCGCCGCGCGC GAACGCAGCGGTAAAAATCAAGTTCGCCGCGCTCAGCGGACGCGCCGTCATCATTTCAGCCAGCCAGCCCGATGGAGCGC CTTTGCCCTTTGGCGCATCAGTGCGCGATAGGGACAATGCCGAAATCGGCGTGGTTGGCCAAAGCGGCATCATTTTCGCG CGTGGCATCGAAGACACCGGACGCTTGCAGGTGTCCTGGGGCACACACTCAGCGCAACGCTGCACGATCGAATATCGGCT GCCGGAGAAGGTCCGCAATGCGACATCATTCACGCAGATCCGATCGGTATGCCAGCCCGACGCAAAGGGGGAATCGTGA
Upstream 100 bases:
>100_bases AACCCGCGCAGGTCAGTTACACGTTTATCTCGGACTATGGCGCCGGTGTATCTGGCGTCCACAATGCGAAGCCAACACAG GAAGCGAAAGGGCAATGACG
Downstream 100 bases:
>100_bases ATGCCGATACTGCTATCAGATCGCGCCAAATGTTGCCAACCATCGCCGTGACTAGGCTTGGCCTGATCACTATCGGCGCA ATGTCAACGCCTCGCACGCG
Product: Fimbrial biogenesis outer membrane usher
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MRTRKPRASRALAARWILATALPTAVFANEPGKTATIAAVKFNSDFLKRSDGTSVDVSRFAFGNPISPGDHAVDIYLNGS WVGRETVRFRSRDEVVGPCMDRSLITRLNLDEQALPPASRNAIAQAVSGECTRPSDISEDLTWSFNLNDLRLDIGVAQAL LRRTPRGSVSPELLDDGVPSATVAYNFNTFHTTGSSSVTSTYLGIDSGLNIGAWHLRQRSSMSWQSMGQSTYDYQNIATY LQRDISRLRSQLTVGDAYTDGAVFDSFSVRGVNLASDDRMLPDSARGYAPLVRGVARSNARVTVTQNGNKLYETTVAPGP FEIKDLYATGYGGNLLVTVTEADGSQSSFTVPYASVAQLLRPGITRYSATVGEYRDGSRTSSRREKLVQGTVQHGFNNFV TGYAGLVLSEGYRAGLIGAALNLPIGAFALDATHAHASIDQVDNTSGQSVRLSYSKFVPSTSTSMSLAAYRYATRGFWTM SDAFTARASGGNARAVDRQRSQVQLTLNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVGYSNSLRVLGLPMTYNIAASR QREAMTGRFTTQVFASLTVPLGKSSHAPMLSFGATHSDSQSSQQMRLSGTALEDNAFTYGLNVDRSPNTTTGGGNVQYRT PYTTVSASVSGGGGYTQYSGGLQGALVAHQGGITLANFLGDTIGIVEAKGATGARVANATGVRIDAFGYAIVPYLQPYNM NTIEIDPRGIPLDVSLDATSAQVAPRANAAVKIKFAALSGRAVIISASQPDGAPLPFGASVRDRDNAEIGVVGQSGIIFA RGIEDTGRLQVSWGTHSAQRCTIEYRLPEKVRNATSFTQIRSVCQPDAKGES
Sequences:
>Translated_852_residues MRTRKPRASRALAARWILATALPTAVFANEPGKTATIAAVKFNSDFLKRSDGTSVDVSRFAFGNPISPGDHAVDIYLNGS WVGRETVRFRSRDEVVGPCMDRSLITRLNLDEQALPPASRNAIAQAVSGECTRPSDISEDLTWSFNLNDLRLDIGVAQAL LRRTPRGSVSPELLDDGVPSATVAYNFNTFHTTGSSSVTSTYLGIDSGLNIGAWHLRQRSSMSWQSMGQSTYDYQNIATY LQRDISRLRSQLTVGDAYTDGAVFDSFSVRGVNLASDDRMLPDSARGYAPLVRGVARSNARVTVTQNGNKLYETTVAPGP FEIKDLYATGYGGNLLVTVTEADGSQSSFTVPYASVAQLLRPGITRYSATVGEYRDGSRTSSRREKLVQGTVQHGFNNFV TGYAGLVLSEGYRAGLIGAALNLPIGAFALDATHAHASIDQVDNTSGQSVRLSYSKFVPSTSTSMSLAAYRYATRGFWTM SDAFTARASGGNARAVDRQRSQVQLTLNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVGYSNSLRVLGLPMTYNIAASR QREAMTGRFTTQVFASLTVPLGKSSHAPMLSFGATHSDSQSSQQMRLSGTALEDNAFTYGLNVDRSPNTTTGGGNVQYRT PYTTVSASVSGGGGYTQYSGGLQGALVAHQGGITLANFLGDTIGIVEAKGATGARVANATGVRIDAFGYAIVPYLQPYNM NTIEIDPRGIPLDVSLDATSAQVAPRANAAVKIKFAALSGRAVIISASQPDGAPLPFGASVRDRDNAEIGVVGQSGIIFA RGIEDTGRLQVSWGTHSAQRCTIEYRLPEKVRNATSFTQIRSVCQPDAKGES >Mature_852_residues MRTRKPRASRALAARWILATALPTAVFANEPGKTATIAAVKFNSDFLKRSDGTSVDVSRFAFGNPISPGDHAVDIYLNGS WVGRETVRFRSRDEVVGPCMDRSLITRLNLDEQALPPASRNAIAQAVSGECTRPSDISEDLTWSFNLNDLRLDIGVAQAL LRRTPRGSVSPELLDDGVPSATVAYNFNTFHTTGSSSVTSTYLGIDSGLNIGAWHLRQRSSMSWQSMGQSTYDYQNIATY LQRDISRLRSQLTVGDAYTDGAVFDSFSVRGVNLASDDRMLPDSARGYAPLVRGVARSNARVTVTQNGNKLYETTVAPGP FEIKDLYATGYGGNLLVTVTEADGSQSSFTVPYASVAQLLRPGITRYSATVGEYRDGSRTSSRREKLVQGTVQHGFNNFV TGYAGLVLSEGYRAGLIGAALNLPIGAFALDATHAHASIDQVDNTSGQSVRLSYSKFVPSTSTSMSLAAYRYATRGFWTM SDAFTARASGGNARAVDRQRSQVQLTLNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVGYSNSLRVLGLPMTYNIAASR QREAMTGRFTTQVFASLTVPLGKSSHAPMLSFGATHSDSQSSQQMRLSGTALEDNAFTYGLNVDRSPNTTTGGGNVQYRT PYTTVSASVSGGGGYTQYSGGLQGALVAHQGGITLANFLGDTIGIVEAKGATGARVANATGVRIDAFGYAIVPYLQPYNM NTIEIDPRGIPLDVSLDATSAQVAPRANAAVKIKFAALSGRAVIISASQPDGAPLPFGASVRDRDNAEIGVVGQSGIIFA RGIEDTGRLQVSWGTHSAQRCTIEYRLPEKVRNATSFTQIRSVCQPDAKGES
Specific function: Involved in the export and assembly of the type 3 fimbrial subunit (mrkA) [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=847, Percent_Identity=34.3565525383707, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1790772, Length=844, Percent_Identity=34.2417061611374, Blast_Score=460, Evalue=1e-130, Organism=Escherichia coli, GI1787172, Length=849, Percent_Identity=34.7467608951708, Blast_Score=459, Evalue=1e-130, Organism=Escherichia coli, GI1789533, Length=831, Percent_Identity=32.7316486161252, Blast_Score=427, Evalue=1e-120, Organism=Escherichia coli, GI1786744, Length=848, Percent_Identity=32.5471698113208, Blast_Score=405, Evalue=1e-114, Organism=Escherichia coli, GI1788427, Length=833, Percent_Identity=31.0924369747899, Blast_Score=368, Evalue=1e-102, Organism=Escherichia coli, GI87081778, Length=847, Percent_Identity=26.2101534828808, Blast_Score=246, Evalue=6e-66, Organism=Escherichia coli, GI1789610, Length=841, Percent_Identity=22.7110582639715, Blast_Score=161, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 91242; Mature: 91242
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTRKPRASRALAARWILATALPTAVFANEPGKTATIAAVKFNSDFLKRSDGTSVDVSRF CCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCHHHHCCCCCEEEEHHH AFGNPISPGDHAVDIYLNGSWVGRETVRFRSRDEVVGPCMDRSLITRLNLDEQALPPASR CCCCCCCCCCCEEEEEECCEECCCHHEEECCCCCCCCCCCCCHHHHHCCCCHHCCCCCHH NAIAQAVSGECTRPSDISEDLTWSFNLNDLRLDIGVAQALLRRTPRGSVSPELLDDGVPS HHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHHHCCCCCCCCHHHHHCCCCC ATVAYNFNTFHTTGSSSVTSTYLGIDSGLNIGAWHLRQRSSMSWQSMGQSTYDYQNIATY EEEEEECEEEEECCCCCCEEEEEECCCCCCCCEEEHHHCCCCCHHHCCCCCCCHHHHHHH LQRDISRLRSQLTVGDAYTDGAVFDSFSVRGVNLASDDRMLPDSARGYAPLVRGVARSNA HHHHHHHHHHHEEECCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC RVTVTQNGNKLYETTVAPGPFEIKDLYATGYGGNLLVTVTEADGSQSSFTVPYASVAQLL EEEEEECCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCCCEEECCHHHHHHHH RPGITRYSATVGEYRDGSRTSSRREKLVQGTVQHGFNNFVTGYAGLVLSEGYRAGLIGAA CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCEEEEHH LNLPIGAFALDATHAHASIDQVDNTSGQSVRLSYSKFVPSTSTSMSLAAYRYATRGFWTM HCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHCCEEEE SDAFTARASGGNARAVDRQRSQVQLTLNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVG CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHCCCCCEEEEEEC YSNSLRVLGLPMTYNIAASRQREAMTGRFTTQVFASLTVPLGKSSHAPMLSFGATHSDSQ CCCCEEEEECCEEEEEHHCCHHHHHCCHHHHEEHEEEEECCCCCCCCCEEEECCCCCCCC SSQQMRLSGTALEDNAFTYGLNVDRSPNTTTGGGNVQYRTPYTTVSASVSGGGGYTQYSG CCCEEEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCEEECC GLQGALVAHQGGITLANFLGDTIGIVEAKGATGARVANATGVRIDAFGYAIVPYLQPYNM CCCEEEEEECCCEEEHHHCCCCEEEEEECCCCCCEEECCCCEEEEECCEEEEEEECCCCC NTIEIDPRGIPLDVSLDATSAQVAPRANAAVKIKFAALSGRAVIISASQPDGAPLPFGAS CEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCC VRDRDNAEIGVVGQSGIIFARGIEDTGRLQVSWGTHSAQRCTIEYRLPEKVRNATSFTQI CCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHH RSVCQPDAKGES HHHHCCCCCCCC >Mature Secondary Structure MRTRKPRASRALAARWILATALPTAVFANEPGKTATIAAVKFNSDFLKRSDGTSVDVSRF CCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCHHHHCCCCCEEEEHHH AFGNPISPGDHAVDIYLNGSWVGRETVRFRSRDEVVGPCMDRSLITRLNLDEQALPPASR CCCCCCCCCCCEEEEEECCEECCCHHEEECCCCCCCCCCCCCHHHHHCCCCHHCCCCCHH NAIAQAVSGECTRPSDISEDLTWSFNLNDLRLDIGVAQALLRRTPRGSVSPELLDDGVPS HHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHHHCCCCCCCCHHHHHCCCCC ATVAYNFNTFHTTGSSSVTSTYLGIDSGLNIGAWHLRQRSSMSWQSMGQSTYDYQNIATY EEEEEECEEEEECCCCCCEEEEEECCCCCCCCEEEHHHCCCCCHHHCCCCCCCHHHHHHH LQRDISRLRSQLTVGDAYTDGAVFDSFSVRGVNLASDDRMLPDSARGYAPLVRGVARSNA HHHHHHHHHHHEEECCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC RVTVTQNGNKLYETTVAPGPFEIKDLYATGYGGNLLVTVTEADGSQSSFTVPYASVAQLL EEEEEECCCEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCCCEEECCHHHHHHHH RPGITRYSATVGEYRDGSRTSSRREKLVQGTVQHGFNNFVTGYAGLVLSEGYRAGLIGAA CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCEEEEHH LNLPIGAFALDATHAHASIDQVDNTSGQSVRLSYSKFVPSTSTSMSLAAYRYATRGFWTM HCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHCCEEEE SDAFTARASGGNARAVDRQRSQVQLTLNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVG CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHCCCCCEEEEEEC YSNSLRVLGLPMTYNIAASRQREAMTGRFTTQVFASLTVPLGKSSHAPMLSFGATHSDSQ CCCCEEEEECCEEEEEHHCCHHHHHCCHHHHEEHEEEEECCCCCCCCCEEEECCCCCCCC SSQQMRLSGTALEDNAFTYGLNVDRSPNTTTGGGNVQYRTPYTTVSASVSGGGGYTQYSG CCCEEEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEECCCEEEEEEECCCCCCEEECC GLQGALVAHQGGITLANFLGDTIGIVEAKGATGARVANATGVRIDAFGYAIVPYLQPYNM CCCEEEEEECCCEEEHHHCCCCEEEEEECCCCCCEEECCCCEEEEECCEEEEEEECCCCC NTIEIDPRGIPLDVSLDATSAQVAPRANAAVKIKFAALSGRAVIISASQPDGAPLPFGAS CEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCC VRDRDNAEIGVVGQSGIIFARGIEDTGRLQVSWGTHSAQRCTIEYRLPEKVRNATSFTQI CCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHH RSVCQPDAKGES HHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1670938 [H]