| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is cpdB [H]
Identifier: 94309517
GI number: 94309517
Start: 611474
End: 613582
Strand: Direct
Name: cpdB [H]
Synonym: Rmet_0572
Alternate gene names: 94309517
Gene position: 611474-613582 (Clockwise)
Preceding gene: 94309513
Following gene: 94309518
Centisome position: 15.57
GC content: 62.49
Gene sequence:
>2109_bases ATGCAACTCCATCGCATCCAGGCCGCGACGCTCGCGGCCTTGCTGGTGGGGGTGACCGCGCTGGCCGCCTGCGGCTCAGA CGACCCCTCGTCCTCCACCTCCGGCAACAACGGCGGCAATAGCGGAAACAGTGGCAACGGCGGTAACAACGGTGGCGACA CCCCGGCGGCGATCGTCGCAGGTACCAAGTCCACGCTGGCGCTGCTCGAGACCACCGACCTCCACACCAACGTCCTGAGC TATGACTACTTCAAGCTGGCCGAGGACAAGTCGCTGGGCTTCGAGCGCGTCTCGACGCTGATCAAGTCCGCGCGGCAGGA GTTTCCGAACAGCCTGTTGCTCGACAACGGCGACACGATCCAGGGCACCGCGCTCTCGGACTATCAGGCACTGGTGAAGC CGGTCTCGTGCACCGAGACCCTGGCGATGTACAAGGTGATGAACGCCGCTGGCTTTGACGGCGGTGGCATCGGCAATCAC GAATTCAATTATGGGTTGCAGTACCTGAGCCAGGTCACCGGCAGCAAGTTCAACGTGGACGGCCTGCCCGATCCTGCCAC CCAGACCGCATGCGCGGGCCCGAAGTTTCCGCAGGTGCTGGCCAACGTCTACAGCGTCAAGACGCGCGCGCCGCTGTTCC AGCCGTACGCGATCCTGAGCAAGACGCTGACGGCTACCGGCCCGGACGGCAAGACGGTCACCGCGCCGATCAAGGTTGGC ATCATCGGCTTCGCGCCGCCGGCCATCATGAGCTGGGACAAGCGCTGGCTCGACGGCAAGGTCTACACCGAAGGTCTGGT GGAGACGGCCCAGAAATACATTCCCGAGATGCGCGCCAAGGGCGCCGACCTCGTCGTCGTGATTTCGCATGGTGGCCTGG ATAACTCGACCTACTCGCCGACGATGGAGAACGGCAGCTATCACCTGTCGAAGGTGGCTGGCGTGGACGCGATGCTGATC GGCCACTCGCACCAGATCTTCCCGGATGCCAACAGCACGGTCGGCCAGTTCAACCTGCCGGGCGTGGACAAGGTCAAGGG CACGGTCAACGGCGTGCCGACCGTGATGGCCAACTACTGGGGCAAGCACCTGGGCGTGATCAACCTGTCGCTGAACCACG ACGGCAAGAGCTGGAGCGTCGATCGCACCAAGACCACTGTGGAGGCGCGCTCGACCCAGAACGCCGACAAGACCTATGTG ACGGCCGACGCCAGCGTGGCGCCGATGATCGACACCGAGCACCAGGCAACTATCCAATACGTGAAGACGCCGATCGGCAG TACCAATTACCGCATGTCGAGCTACTTCGCCGACGTGGGTGATCCGGGTGCGATTCAGATCGTCAACATGGCACAGGCTG CCTACGTGAAGGACTACGTCACCGCGAACCTGCCAGCGCTGGCCTCGCTGCCCGTGCTGTCGGTTTCGGCCCCGTTCAAG AGCGGCTTTGGCGGTGGCAGCGACTATACCGACGTGGCGTCCGGCAACCTGGCCATCAACAACGCGGCCGATCTCTACCT GTACCCGAACACGGTGTACGCGGTGAAGGTCAACGGCGACGATGTGAAGGCATGGCTGGAAACCGCGGCCAAGCGCTTCA ACCAGATCGACCCGGCCAAGACGACCGACCAGCAGTTGATCAGCACCTTCCCGGGCTACAACTTCGACATGTTCACCGAT CCGGACATGCAGTATGAGATCGACGTGACGCAGCCGGTTGGCAGCCGTATCAAGAACCTGACGTACAAGGGCGCGCCGGT GACCGCGGCGATGAACTTCATCGTGGCTACCAACAACTATCGTGCCAGCGGGGGCGGCAACTTCCCGGGCCTCGATGGCA CCAAGACGATCTATGCCTCGCCAGATGCCAACCGCGATGTGCTGATCAGCTACATCAAGAAGGTGGCCAATGTCACACGC ATGGTCAACGGCAGCGCGCGTAGCTGGAAGTTCACCAAGGTGACCACCACGGGCAAGGTGGTGTTCAGCTCGGGTATCGG GATGCTGCAGCAGGCAACCGACGCTGGGTTGACCAATATCTCGCTCGACAAGGCAGACGATGGGTCCGGCAAGAACCTGT CGCAGTACAAGCTCGATCTCAGCTTGTGA
Upstream 100 bases:
>100_bases CACGCGAATGACGCGATTTCGCCACTTTCCTGCCATCGCGGTTGCCGACAATTCCGTGGCTGCACCAAAACCAAAACAAA TCAATCAGGGAACCCGAAAC
Downstream 100 bases:
>100_bases TTGACTGATTGACCATGCACGCCATGCCAACAACTATGGCCGCACCGCGGCGCTTTCCTCGCATCCACCCGCTGTTTGTG GCGGCCACGCTGGCTGTAAC
Product: 2':3'-cyclic-nucleotide 2'-phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 702; Mature: 702
Protein sequence:
>702_residues MQLHRIQAATLAALLVGVTALAACGSDDPSSSTSGNNGGNSGNSGNGGNNGGDTPAAIVAGTKSTLALLETTDLHTNVLS YDYFKLAEDKSLGFERVSTLIKSARQEFPNSLLLDNGDTIQGTALSDYQALVKPVSCTETLAMYKVMNAAGFDGGGIGNH EFNYGLQYLSQVTGSKFNVDGLPDPATQTACAGPKFPQVLANVYSVKTRAPLFQPYAILSKTLTATGPDGKTVTAPIKVG IIGFAPPAIMSWDKRWLDGKVYTEGLVETAQKYIPEMRAKGADLVVVISHGGLDNSTYSPTMENGSYHLSKVAGVDAMLI GHSHQIFPDANSTVGQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVINLSLNHDGKSWSVDRTKTTVEARSTQNADKTYV TADASVAPMIDTEHQATIQYVKTPIGSTNYRMSSYFADVGDPGAIQIVNMAQAAYVKDYVTANLPALASLPVLSVSAPFK SGFGGGSDYTDVASGNLAINNAADLYLYPNTVYAVKVNGDDVKAWLETAAKRFNQIDPAKTTDQQLISTFPGYNFDMFTD PDMQYEIDVTQPVGSRIKNLTYKGAPVTAAMNFIVATNNYRASGGGNFPGLDGTKTIYASPDANRDVLISYIKKVANVTR MVNGSARSWKFTKVTTTGKVVFSSGIGMLQQATDAGLTNISLDKADDGSGKNLSQYKLDLSL
Sequences:
>Translated_702_residues MQLHRIQAATLAALLVGVTALAACGSDDPSSSTSGNNGGNSGNSGNGGNNGGDTPAAIVAGTKSTLALLETTDLHTNVLS YDYFKLAEDKSLGFERVSTLIKSARQEFPNSLLLDNGDTIQGTALSDYQALVKPVSCTETLAMYKVMNAAGFDGGGIGNH EFNYGLQYLSQVTGSKFNVDGLPDPATQTACAGPKFPQVLANVYSVKTRAPLFQPYAILSKTLTATGPDGKTVTAPIKVG IIGFAPPAIMSWDKRWLDGKVYTEGLVETAQKYIPEMRAKGADLVVVISHGGLDNSTYSPTMENGSYHLSKVAGVDAMLI GHSHQIFPDANSTVGQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVINLSLNHDGKSWSVDRTKTTVEARSTQNADKTYV TADASVAPMIDTEHQATIQYVKTPIGSTNYRMSSYFADVGDPGAIQIVNMAQAAYVKDYVTANLPALASLPVLSVSAPFK SGFGGGSDYTDVASGNLAINNAADLYLYPNTVYAVKVNGDDVKAWLETAAKRFNQIDPAKTTDQQLISTFPGYNFDMFTD PDMQYEIDVTQPVGSRIKNLTYKGAPVTAAMNFIVATNNYRASGGGNFPGLDGTKTIYASPDANRDVLISYIKKVANVTR MVNGSARSWKFTKVTTTGKVVFSSGIGMLQQATDAGLTNISLDKADDGSGKNLSQYKLDLSL >Mature_702_residues MQLHRIQAATLAALLVGVTALAACGSDDPSSSTSGNNGGNSGNSGNGGNNGGDTPAAIVAGTKSTLALLETTDLHTNVLS YDYFKLAEDKSLGFERVSTLIKSARQEFPNSLLLDNGDTIQGTALSDYQALVKPVSCTETLAMYKVMNAAGFDGGGIGNH EFNYGLQYLSQVTGSKFNVDGLPDPATQTACAGPKFPQVLANVYSVKTRAPLFQPYAILSKTLTATGPDGKTVTAPIKVG IIGFAPPAIMSWDKRWLDGKVYTEGLVETAQKYIPEMRAKGADLVVVISHGGLDNSTYSPTMENGSYHLSKVAGVDAMLI GHSHQIFPDANSTVGQFNLPGVDKVKGTVNGVPTVMANYWGKHLGVINLSLNHDGKSWSVDRTKTTVEARSTQNADKTYV TADASVAPMIDTEHQATIQYVKTPIGSTNYRMSSYFADVGDPGAIQIVNMAQAAYVKDYVTANLPALASLPVLSVSAPFK SGFGGGSDYTDVASGNLAINNAADLYLYPNTVYAVKVNGDDVKAWLETAAKRFNQIDPAKTTDQQLISTFPGYNFDMFTD PDMQYEIDVTQPVGSRIKNLTYKGAPVTAAMNFIVATNNYRASGGGNFPGLDGTKTIYASPDANRDVLISYIKKVANVTR MVNGSARSWKFTKVTTTGKVVFSSGIGMLQQATDAGLTNISLDKADDGSGKNLSQYKLDLSL
Specific function: This bifunctional enzyme catalyzes two consecutive reactions during ribonucleic acid degradation. Converts a 2',3'- cyclic nucleotide to a 3'-nucleotide and then the 3'-nucleotide to the corresponding nucleoside and phosphate [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1790658, Length=625, Percent_Identity=42.08, Blast_Score=455, Evalue=1e-129, Organism=Escherichia coli, GI1786687, Length=591, Percent_Identity=23.1810490693739, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR006294 - InterPro: IPR004843 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.6; =3.1.4.16 [H]
Molecular weight: Translated: 74442; Mature: 74442
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00786 5_NUCLEOTIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLHRIQAATLAALLVGVTALAACGSDDPSSSTSGNNGGNSGNSGNGGNNGGDTPAAIVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE GTKSTLALLETTDLHTNVLSYDYFKLAEDKSLGFERVSTLIKSARQEFPNSLLLDNGDTI CCCCEEEEEEECCCHHHHHCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEE QGTALSDYQALVKPVSCTETLAMYKVMNAAGFDGGGIGNHEFNYGLQYLSQVTGSKFNVD ECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC GLPDPATQTACAGPKFPQVLANVYSVKTRAPLFQPYAILSKTLTATGPDGKTVTAPIKVG CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE IIGFAPPAIMSWDKRWLDGKVYTEGLVETAQKYIPEMRAKGADLVVVISHGGLDNSTYSP EEECCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC TMENGSYHLSKVAGVDAMLIGHSHQIFPDANSTVGQFNLPGVDKVKGTVNGVPTVMANYW CCCCCCEEEHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHC GKHLGVINLSLNHDGKSWSVDRTKTTVEARSTQNADKTYVTADASVAPMIDTEHQATIQY CCEEEEEEEEECCCCCCEECCCHHEEEEHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH VKTPIGSTNYRMSSYFADVGDPGAIQIVNMAQAAYVKDYVTANLPALASLPVLSVSAPFK HHCCCCCCCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHCCCEEEECCCCC SGFGGGSDYTDVASGNLAINNAADLYLYPNTVYAVKVNGDDVKAWLETAAKRFNQIDPAK CCCCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC TTDQQLISTFPGYNFDMFTDPDMQYEIDVTQPVGSRIKNLTYKGAPVTAAMNFIVATNNY CHHHHHHHHCCCCCCCEECCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEEEEEEEECCE RASGGGNFPGLDGTKTIYASPDANRDVLISYIKKVANVTRMVNGSARSWKFTKVTTTGKV ECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEE VFSSGIGMLQQATDAGLTNISLDKADDGSGKNLSQYKLDLSL EEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MQLHRIQAATLAALLVGVTALAACGSDDPSSSTSGNNGGNSGNSGNGGNNGGDTPAAIVA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE GTKSTLALLETTDLHTNVLSYDYFKLAEDKSLGFERVSTLIKSARQEFPNSLLLDNGDTI CCCCEEEEEEECCCHHHHHCCHHHEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEE QGTALSDYQALVKPVSCTETLAMYKVMNAAGFDGGGIGNHEFNYGLQYLSQVTGSKFNVD ECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEECC GLPDPATQTACAGPKFPQVLANVYSVKTRAPLFQPYAILSKTLTATGPDGKTVTAPIKVG CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEE IIGFAPPAIMSWDKRWLDGKVYTEGLVETAQKYIPEMRAKGADLVVVISHGGLDNSTYSP EEECCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC TMENGSYHLSKVAGVDAMLIGHSHQIFPDANSTVGQFNLPGVDKVKGTVNGVPTVMANYW CCCCCCEEEHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHC GKHLGVINLSLNHDGKSWSVDRTKTTVEARSTQNADKTYVTADASVAPMIDTEHQATIQY CCEEEEEEEEECCCCCCEECCCHHEEEEHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH VKTPIGSTNYRMSSYFADVGDPGAIQIVNMAQAAYVKDYVTANLPALASLPVLSVSAPFK HHCCCCCCCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHCCCEEEECCCCC SGFGGGSDYTDVASGNLAINNAADLYLYPNTVYAVKVNGDDVKAWLETAAKRFNQIDPAK CCCCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC TTDQQLISTFPGYNFDMFTDPDMQYEIDVTQPVGSRIKNLTYKGAPVTAAMNFIVATNNY CHHHHHHHHCCCCCCCEECCCCCEEEEEECCHHHHHHHHCCCCCCCCEEEEEEEEEECCE RASGGGNFPGLDGTKTIYASPDANRDVLISYIKKVANVTRMVNGSARSWKFTKVTTTGKV ECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEE VFSSGIGMLQQATDAGLTNISLDKADDGSGKNLSQYKLDLSL EEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3005231; 7610040; 9278503; 2172762; 9298646 [H]