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The map label for this gene is sodB [H]

Identifier: 94309484

GI number: 94309484

Start: 574345

End: 574923

Strand: Direct

Name: sodB [H]

Synonym: Rmet_0539

Alternate gene names: 94309484

Gene position: 574345-574923 (Clockwise)

Preceding gene: 335055498

Following gene: 94309485

Centisome position: 14.62

GC content: 60.1

Gene sequence:

>579_bases
ATGGAACACAAGCTCCCTTCTCTCCCGTACGCGCATGATGCCCTCGCTCCGCATATCTCCAAGGAGACCCTGGAGTTCCA
TCATGACAAGCATCACCAGACCTACGTCACGAACCTGAACAACCTGATCAAGGGCACCGAGTTCGAGAGCGCATCGCTGG
AAGAGATCGTCAAGAAGTCGTCCGGCGGCATCTTCAACAACGCCGCCCAAGTGTGGAACCACACGTTCTACTGGGAATCG
ATGAAGCCGAACGGCGGTGGCCAGCCGACCGGCGCCCTGGCTGACGCGATCAACGCCAAGTGGGGTTCGTTCGACAAGTT
CAAGGAAGAATTCACGAAGGTGGCAGTGGGCACGTTCGGTTCGGGCTGGGCCTGGCTGGTCAAGAAGGCCGACGGCTCGC
TGGACCTGGTGTCGACCTCCAACGCCGCCACCCCGCTGACCACCGACGCCAAGCCGCTGCTGACCTGCGACGTGTGGGAA
CACGCCTACTACATCGACTACCGCAATGCTCGTCCGAAGTACGTCGAGGCATTCTGGAACGTCGTGAGCTGGGACTTCGC
GTCGAAGAACTTCGCCTGA

Upstream 100 bases:

>100_bases
CTAACATGAGGGCAGGGGGCTTTCCGACGTCGTTTGCGCGGGTCTGGCAAGTCACCTACAATCGGCAGTTCTCCCCACCA
CAAACCGCAGAGACAGAACA

Downstream 100 bases:

>100_bases
GCGAATTCGGCAAGTCGAAGCTGAGTAACAAGGCCCTCCTTAGCGAGGGCCTTGTTTCTTTGGGGCGAGGGTGATGAACG
GAGGCCAGTTCGTCGTGTTT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEHKLPSLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFESASLEEIVKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKVAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVSWDFASKNFA

Sequences:

>Translated_192_residues
MEHKLPSLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFESASLEEIVKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKVAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVSWDFASKNFA
>Mature_192_residues
MEHKLPSLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFESASLEEIVKKSSGGIFNNAAQVWNHTFYWES
MKPNGGGQPTGALADAINAKWGSFDKFKEEFTKVAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWE
HAYYIDYRNARPKYVEAFWNVVSWDFASKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=43.2835820895522, Blast_Score=170, Evalue=6e-43,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=43.2835820895522, Blast_Score=170, Evalue=6e-43,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=37.8238341968912, Blast_Score=130, Evalue=7e-31,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=69.7916666666667, Blast_Score=292, Evalue=8e-81,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=46.1165048543689, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=38.3084577114428, Blast_Score=144, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=37, Blast_Score=136, Evalue=5e-33,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=37.799043062201, Blast_Score=129, Evalue=4e-31,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=42.0512820512821, Blast_Score=156, Evalue=8e-39,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21527; Mature: 21527

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHKLPSLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFESASLEEIVKKS
CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SGGIFNNAAQVWNHTFYWESMKPNGGGQPTGALADAINAKWGSFDKFKEEFTKVAVGTFG
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHH
VVSWDFASKNFA
HHHHCCCCCCCC
>Mature Secondary Structure
MEHKLPSLPYAHDALAPHISKETLEFHHDKHHQTYVTNLNNLIKGTEFESASLEEIVKKS
CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SGGIFNNAAQVWNHTFYWESMKPNGGGQPTGALADAINAKWGSFDKFKEEFTKVAVGTFG
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTCDVWEHAYYIDYRNARPKYVEAFWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHH
VVSWDFASKNFA
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]