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The map label for this gene is ycaR [C]

Identifier: 94309479

GI number: 94309479

Start: 569302

End: 569511

Strand: Reverse

Name: ycaR [C]

Synonym: Rmet_0534

Alternate gene names: 94309479

Gene position: 569511-569302 (Counterclockwise)

Preceding gene: 94309480

Following gene: 94309478

Centisome position: 14.5

GC content: 64.29

Gene sequence:

>210_bases
ATGGACAACCGGCTGCTTGAAATCCTCGTTTGCCCGCTGTGCAAGGGCAAACTGGAATACGATCGCGCCGCCCAGGAACT
GATCTGCCACGCCGACAAGCTGGCCTACCCGATCCGTGATGGCATTCCGGTCATGCTGGCGGACGAAGCGCGCCAGACCG
TGCCGGGCCGTGTGGTACCGGTGGAACCCTCGGCGCCGGCCGGCAATTGA

Upstream 100 bases:

>100_bases
CGCGTCGTGCAGGCGCGCAACCCGGCCATCGCCACACCCGTCACCGTGGGGCAATCCACCGCCACCGGGATGGCCGACGG
TCTCGACAAGGAACACCAAG

Downstream 100 bases:

>100_bases
TGGGCAAAGGTCGCACGATGAGCATCCCGACCTTTACCGTTGTCATCCCTGCCCGCCTCGCCTCCACGCGGCTGCCAAAC
AAGCCGCTGGCCGACATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQTVPGRVVPVEPSAPAGN

Sequences:

>Translated_69_residues
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQTVPGRVVPVEPSAPAGN
>Mature_69_residues
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQTVPGRVVPVEPSAPAGN

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=51, Percent_Identity=64.7058823529412, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y534_RALME (Q1LR06)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_582689.1
- ProteinModelPortal:   Q1LR06
- SMR:   Q1LR06
- STRING:   Q1LR06
- GeneID:   4037323
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0534
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- PhylomeDB:   Q1LR06
- ProtClustDB:   CLSK897353
- BioCyc:   RMET266264:RMET_0534-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 7542; Mature: 7542

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQTVPGRVVP
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEE
VEPSAPAGN
CCCCCCCCC
>Mature Secondary Structure
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQTVPGRVVP
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEE
VEPSAPAGN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA