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The map label for this gene is ybeY [C]

Identifier: 94309396

GI number: 94309396

Start: 478581

End: 479318

Strand: Reverse

Name: ybeY [C]

Synonym: Rmet_0451

Alternate gene names: 94309396

Gene position: 479318-478581 (Counterclockwise)

Preceding gene: 94309397

Following gene: 94309395

Centisome position: 12.2

GC content: 66.53

Gene sequence:

>738_bases
TTGACCAAGAAGTCTCCCAATGCCACCAGCCTCGTGCTGTTCGATGCCGATGGCCGCGCCCGCAAGGCAAACGCGCACGC
GCTGCGTATCCAGCTGGCCGACGGCCGCAGCCTGACGCTGGACCTGTCCCAGGCCGGCGACGGCGTGGTGGCGCTGCTCG
CCGAGCACACCGATACCCGCCAGCAGGCTGGCCTGCTGGTGCGCCCGGACAACAGCGACGCGCTGTCCGTGGCCGTGACC
GCCACGCCGATCGTCACCACCACGGGCACGCCGGCGACCCCGCCCGCGCTCGAGCTTGACGTGCAGCATGGCGACGGCGT
GTCGAAGCGCAACGGCCTGCCGAGCCGCAAGCAAATCGAGAAATGGGTGAAGTCCGCGCTCTATGCCGACGCCGCGCTGA
CAGTGCGCTTCGTCGACGAGACGGAAGGTCGCACGCTGAACCGCAGCTATCGCGGCAAGGACTACGCCACCAACGTGCTC
ACGTTCGCCTATGCCGAGAACGACGACGATCCGGTGGCCGGCGACATCGTGCTGTGCTGCCCGGTAGTGGAGTCCGAAGC
CAAGGCGCAGAAGAAGTCGCTCGAAGCCCACTACGCCCATCTGATCGTGCACGGGGTGCTCCATGCCCAGGGCTATGAGC
ACGATGACGACACCGAGGCCGAGGAAATGGAAGCCATCGAGACCGAAACGCTGCAGGCCCTGGGTTTCGAGGATCCGTAC
AAGCCGATCCGCGAGTAA

Upstream 100 bases:

>100_bases
TCACGCGCTTTACCAGCGTCGACGTTGTTCGCCACCCGCTCGTGGCGCGCATCGTCGAGGCTTATGACGAATATCACGCC
CAGCACAAGGACGCCTGATC

Downstream 100 bases:

>100_bases
CAGACAGTCTGGCTCCCCACTCCCGCAAGCGTGAGCGGGGAGCACGAAAAGCCACCCGGACAGCCACCCCACCCGGCCCT
GTCACGGGCCCGCAAGGCTT

Product: unkown domain/putative metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTKKSPNATSLVLFDADGRARKANAHALRIQLADGRSLTLDLSQAGDGVVALLAEHTDTRQQAGLLVRPDNSDALSVAVT
ATPIVTTTGTPATPPALELDVQHGDGVSKRNGLPSRKQIEKWVKSALYADAALTVRFVDETEGRTLNRSYRGKDYATNVL
TFAYAENDDDPVAGDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPY
KPIRE

Sequences:

>Translated_245_residues
MTKKSPNATSLVLFDADGRARKANAHALRIQLADGRSLTLDLSQAGDGVVALLAEHTDTRQQAGLLVRPDNSDALSVAVT
ATPIVTTTGTPATPPALELDVQHGDGVSKRNGLPSRKQIEKWVKSALYADAALTVRFVDETEGRTLNRSYRGKDYATNVL
TFAYAENDDDPVAGDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPY
KPIRE
>Mature_244_residues
TKKSPNATSLVLFDADGRARKANAHALRIQLADGRSLTLDLSQAGDGVVALLAEHTDTRQQAGLLVRPDNSDALSVAVTA
TPIVTTTGTPATPPALELDVQHGDGVSKRNGLPSRKQIEKWVKSALYADAALTVRFVDETEGRTLNRSYRGKDYATNVLT
FAYAENDDDPVAGDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPYK
PIRE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=136, Percent_Identity=47.7941176470588, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 26533; Mature: 26402

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKSPNATSLVLFDADGRARKANAHALRIQLADGRSLTLDLSQAGDGVVALLAEHTDTR
CCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCEEEEEECCCCCH
QQAGLLVRPDNSDALSVAVTATPIVTTTGTPATPPALELDVQHGDGVSKRNGLPSRKQIE
HHCCEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHH
KWVKSALYADAALTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDDPVAGDIVLCC
HHHHHHHHCCEEEEEEEEECCCCCEECCCCCCCCHHCEEEEEEEECCCCCCCCCCEEEEE
PVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
KPIRE
HHHCC
>Mature Secondary Structure 
TKKSPNATSLVLFDADGRARKANAHALRIQLADGRSLTLDLSQAGDGVVALLAEHTDTR
CCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCEEEEEECCCCCH
QQAGLLVRPDNSDALSVAVTATPIVTTTGTPATPPALELDVQHGDGVSKRNGLPSRKQIE
HHCCEEEECCCCCEEEEEEEECEEEEECCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHH
KWVKSALYADAALTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDDPVAGDIVLCC
HHHHHHHHCCEEEEEEEEECCCCCEECCCCCCCCHHCEEEEEEEECCCCCCCCCCEEEEE
PVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
KPIRE
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA