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The map label for this gene is gylR [H]

Identifier: 94309282

GI number: 94309282

Start: 354847

End: 355632

Strand: Reverse

Name: gylR [H]

Synonym: Rmet_0337

Alternate gene names: 94309282

Gene position: 355632-354847 (Counterclockwise)

Preceding gene: 94309288

Following gene: 94309281

Centisome position: 9.05

GC content: 69.47

Gene sequence:

>786_bases
ATGGCACGCACGCCGGGCGAGGGTTCAGGCAAGACGCAACGCGGCATCCAGAGTGTGGAGGTCGGCGGCCGCCTGTTGCA
GGCGCTCGCCGATGCGCGGCGTCCGCTGCCGCTGGCCGAACTGGCGGCTGCCGCGCAACTGGCCCCGGCGCAGGCGCACA
CCTATCTGGTGAGCCTGATGCGGCTGGGACTGATCAAGCGCGAGCACGTGGACGGCTACTACGAACCGGGCCCGCTGGCG
CTGCGGCTTGGCATGATGCGGCTCGACAATGAGCCGGCCTACCGTGCCGCAGTGCAGCGCGTGCGGACGCTGGCCACTGA
TATCGGCTTCAACGTCGCCATCAGCCTGCCCACGCCGCAAGGGCCGACCATCGTCCACTACGCGCCTGCCGGCACCTCGC
TGCATCTGAACCTGCACGTCGGCACGGTGATGGCGCTGGCCACCACCGCCACGGGACGCGCCTACTGCGCGTTCCAGCCC
GAATCGCACTGGCTGCCGATCTGGACGCAGCAGCAGACACCGGCCACGGCCTCCACCCTGCCCGCCTTTCTCGAAACACT
TGCCGCCGTCCGGGCACGCGGCACGGAGCGCAGCATCGATTCGCCGAGCCCGGCTGTGAGCAGTCTGGCGATGCCATTGC
TCGACGACGACAGCACGCTGCGACTGGTGCTGACCGCCATCGGCTCCACCGGGGCGATCGACGTCGCATGGGATGGTCCA
GTGGCCAGCGCGCTACGTGCCGCGATCGGCGATATCGCGCGCGCGATGAGGGAAGGTGACGCATGA

Upstream 100 bases:

>100_bases
GCGTGGCCCGCCCCGGGAAAACCCTCATCCAGCATGGCAACAGGGGGCGCCTTGCGAGGCGCATGGATTACCATTTGGAC
TTTTCAGGCAAGGCACAGGC

Downstream 100 bases:

>100_bases
GCGACGACATGCTGGCGGACGCCGCCAAACCCCAACGCGGCATCCAGTCGCTCGACAACACAGGCCAGTTGCTCGGCGCG
CTGGTCGATGCGGGGCAGCC

Product: putative regulatory protein, IclR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLMRLGLIKREHVDGYYEPGPLA
LRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQGPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQP
ESHWLPIWTQQQTPATASTLPAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGP
VASALRAAIGDIARAMREGDA

Sequences:

>Translated_261_residues
MARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLMRLGLIKREHVDGYYEPGPLA
LRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQGPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQP
ESHWLPIWTQQQTPATASTLPAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGP
VASALRAAIGDIARAMREGDA
>Mature_260_residues
ARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLMRLGLIKREHVDGYYEPGPLAL
RLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQGPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQPE
SHWLPIWTQQQTPATASTLPAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGPV
ASALRAAIGDIARAMREGDA

Specific function: May be an activator protein for the gylABX operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27528; Mature: 27397

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHH
RLGLIKREHVDGYYEPGPLALRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQ
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
GPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQPESHWLPIWTQQQTPATASTL
CCEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCHHHHH
PAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGP
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHEEECCCCCEEEEEECCH
VASALRAAIGDIARAMREGDA
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHH
RLGLIKREHVDGYYEPGPLALRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQ
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
GPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQPESHWLPIWTQQQTPATASTL
CCEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCHHHHH
PAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGP
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHEEECCCCCEEEEEECCH
VASALRAAIGDIARAMREGDA
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3225846; 12000953 [H]