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The map label for this gene is rpoX [C]

Identifier: 94309247

GI number: 94309247

Start: 318214

End: 318567

Strand: Reverse

Name: rpoX [C]

Synonym: Rmet_0302

Alternate gene names: 94309247

Gene position: 318567-318214 (Counterclockwise)

Preceding gene: 94309248

Following gene: 94309246

Centisome position: 8.11

GC content: 52.82

Gene sequence:

>354_bases
ATGAACTTCAAGATCAGTGGACACCACCTCGACATCACGCCGCCGCTGCGTGAGTATGTGGAAACGAAACTGGAGCGAAT
TGTCAGACATTTCGATCAGGTCATTGGCGTAAGCGTGCTGCTATCCGTAGACAACCATAAGGAAAAGGACAAGCGTCAGT
ACGCGGAAATCAACCTGCACCTCAAGGGCAAGGACATCTTCGTCGAAGCGCATCATGAAGACCTTTATGCTGCAATCGAC
TGCCTGGTCGACAAGCTCGACCGCCAGGTGATCCGCTACAAGGACCGCGTGCAAGGGCATGACCGGGAAGCGGTCAAGTA
CCAGATGGCCGCCGAACAACTACAACAACAATAA

Upstream 100 bases:

>100_bases
ACCGCGAAGCGCTGAAGATCCCCGCAGTCAATCTCCGCAAGACTTTGTAGCCGAGCCGCAACCGCCTGCCTGGTGCGGCT
CTTTCAGAAGGAGAAGCGCT

Downstream 100 bases:

>100_bases
GTTGGCGGCGACACCAGGTCGCCCCTTAGAGGATAGATAGGAAGAGCAAAGCCGCGCATCTGCGCGGCTTTTTTGATGGG
CGCGAGGCGGACGCGCCGCT

Product: sigma 54 modulation protein, ribosome-associated

Products: NA

Alternate protein names: ORF130 [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDKRQYAEINLHLKGKDIFVEAHHEDLYAAID
CLVDKLDRQVIRYKDRVQGHDREAVKYQMAAEQLQQQ

Sequences:

>Translated_117_residues
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDKRQYAEINLHLKGKDIFVEAHHEDLYAAID
CLVDKLDRQVIRYKDRVQGHDREAVKYQMAAEQLQQQ
>Mature_117_residues
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDKRQYAEINLHLKGKDIFVEAHHEDLYAAID
CLVDKLDRQVIRYKDRVQGHDREAVKYQMAAEQLQQQ

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=36, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13817; Mature: 13817

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDKRQYAEINLH
CCEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHEEEE
LKGKDIFVEAHHEDLYAAIDCLVDKLDRQVIRYKDRVQGHDREAVKYQMAAEQLQQQ
ECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVDNHKEKDKRQYAEINLH
CCEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHEEEE
LKGKDIFVEAHHEDLYAAIDCLVDKLDRQVIRYKDRVQGHDREAVKYQMAAEQLQQQ
ECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1417413 [H]