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The map label for this gene is lolB

Identifier: 94309236

GI number: 94309236

Start: 306639

End: 307253

Strand: Reverse

Name: lolB

Synonym: Rmet_0291

Alternate gene names: 94309236

Gene position: 307253-306639 (Counterclockwise)

Preceding gene: 94309237

Following gene: 94309235

Centisome position: 7.82

GC content: 68.46

Gene sequence:

>615_bases
ATGCTCCGATCCCGTCGATTGGCCCTGCTCTGCCTGGCCACACCGCTCTGGCTCGCCGCGTGCGCCAGCGTGACGCCAAC
GCGCGGCTTCGATGCCAGCGAAACTGCCGCCAGCCAGCTTTACACCGGCCGGTTCTCCGCCAACTACGTCCGCTACGGCC
GCAACGAAGGCGTACAGGGCAGCTTCCGCTGGCAGGAACAAGGCCGCAACGTGCGGCTCGATCTCGTTTCGCCGCTGGGC
CAGACGCTGGCCATCGTTACGGCGACCCCATCCGGGGCCACGCTCGACCTGCCCAACGAGGCGCCGCGCAATGCGCCCGA
GGTCGACAGCCTGATGGAGCAGGCGCTCGGATTCTCGTTGCCGGTATCGGGCATGCGCGACTGGCTGCATGGCCGCGCCG
CGCCGGGCACACCATCGAACGTCACGCGCGACGCGAACGGCCGCCCCGACACTCTGCGGCAGAGTGGCTGGACCGTGCGC
TACCTGGCCTGGCAGGACACGCCCGAGAACGCCACGCCCACGACCACGCTGCCCCGCCGTATCGACATGGCACGCGATGG
CAATGAATCGCCGCTGTCGGTGCGGCTCGTAATCGACCCGGAGAACAAAGAATGA

Upstream 100 bases:

>100_bases
CTGCTGTCGAAGTAGTTCACATCAGGCAAGCACGTTGCACGCCCGGGCCAGTGCCCGGGCGGTTCGTTCTGGCGTGCGCC
ATTTATCCCAACACTTGAAC

Downstream 100 bases:

>100_bases
CCGTCGGCACGGCCCTGCCGCCACCCGAGCTGCGCAACTGCCCGGCCCCAGCCAAGCTCAACCTGTTCCTGCACGTGACC
GGCCGCCGCCCCGACGGCTA

Product: outer membrane lipoprotein LolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLRSRRLALLCLATPLWLAACASVTPTRGFDASETAASQLYTGRFSANYVRYGRNEGVQGSFRWQEQGRNVRLDLVSPLG
QTLAIVTATPSGATLDLPNEAPRNAPEVDSLMEQALGFSLPVSGMRDWLHGRAAPGTPSNVTRDANGRPDTLRQSGWTVR
YLAWQDTPENATPTTTLPRRIDMARDGNESPLSVRLVIDPENKE

Sequences:

>Translated_204_residues
MLRSRRLALLCLATPLWLAACASVTPTRGFDASETAASQLYTGRFSANYVRYGRNEGVQGSFRWQEQGRNVRLDLVSPLG
QTLAIVTATPSGATLDLPNEAPRNAPEVDSLMEQALGFSLPVSGMRDWLHGRAAPGTPSNVTRDANGRPDTLRQSGWTVR
YLAWQDTPENATPTTTLPRRIDMARDGNESPLSVRLVIDPENKE
>Mature_204_residues
MLRSRRLALLCLATPLWLAACASVTPTRGFDASETAASQLYTGRFSANYVRYGRNEGVQGSFRWQEQGRNVRLDLVSPLG
QTLAIVTATPSGATLDLPNEAPRNAPEVDSLMEQALGFSLPVSGMRDWLHGRAAPGTPSNVTRDANGRPDTLRQSGWTVR
YLAWQDTPENATPTTTLPRRIDMARDGNESPLSVRLVIDPENKE

Specific function: Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the lolA protein

COG id: COG3017

COG function: function code M; Outer membrane lipoprotein involved in outer membrane biogenesis

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lolB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LOLB_RALME (Q1LRP9)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_582446.1
- ProteinModelPortal:   Q1LRP9
- SMR:   Q1LRP9
- STRING:   Q1LRP9
- GeneID:   4037078
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0291
- eggNOG:   COG3017
- HOGENOM:   HBG451855
- OMA:   PRNAPEV
- ProtClustDB:   PRK00022
- BioCyc:   RMET266264:RMET_0291-MONOMER
- HAMAP:   MF_00233
- InterPro:   IPR004565
- TIGRFAMs:   TIGR00548

Pfam domain/function: PF03550 LolB

EC number: NA

Molecular weight: Translated: 22350; Mature: 22350

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSRRLALLCLATPLWLAACASVTPTRGFDASETAASQLYTGRFSANYVRYGRNEGVQG
CCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCC
SFRWQEQGRNVRLDLVSPLGQTLAIVTATPSGATLDLPNEAPRNAPEVDSLMEQALGFSL
EEEHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCC
PVSGMRDWLHGRAAPGTPSNVTRDANGRPDTLRQSGWTVRYLAWQDTPENATPTTTLPRR
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCCHH
IDMARDGNESPLSVRLVIDPENKE
EHHCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLRSRRLALLCLATPLWLAACASVTPTRGFDASETAASQLYTGRFSANYVRYGRNEGVQG
CCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCC
SFRWQEQGRNVRLDLVSPLGQTLAIVTATPSGATLDLPNEAPRNAPEVDSLMEQALGFSL
EEEHHHCCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCC
PVSGMRDWLHGRAAPGTPSNVTRDANGRPDTLRQSGWTVRYLAWQDTPENATPTTTLPRR
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCCCCCCCHH
IDMARDGNESPLSVRLVIDPENKE
EHHCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA