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The map label for this gene is ydfD [H]

Identifier: 94309153

GI number: 94309153

Start: 218883

End: 220283

Strand: Reverse

Name: ydfD [H]

Synonym: Rmet_0208

Alternate gene names: 94309153

Gene position: 220283-218883 (Counterclockwise)

Preceding gene: 94309158

Following gene: 94309149

Centisome position: 5.61

GC content: 66.52

Gene sequence:

>1401_bases
ATGAGACTCCTACTAGACCCCTCCACCGGCGTACCGCTGACCGAACAGATCGTGCTGGGCGTGAAGGCCTGGATCAGCTC
GCGGGAAGCGCTGCCTGGCGCGCGTCTGCCGTCGATCCGGCAAATGGCCGCCGAGCACGGCATCAGCCGTTTTCCGGTTA
TCGAGGCCTACGACCGCTTGGTCTCGCAGGGATTGGTCGATTCGCGGCAAGGCTCGGGCTTCTACGTCGCGGACAGCACG
CTGGCCGGGCGCAGTGGGCGCGGCTGGTCCGACCCGAGTCTGGCCGAGGACCTGTCGCTCCATATCATCGACCAGTTCCA
CCACCCCAGTGGCACGCTGAAGCTGGCTGGCGGCTTCGTGCCCGAGGAATGGCGCGACGTGGAGGGCCTGACGCAGGCCA
TTCGCCACATCACGCGCCACGACATCGACAGCGTGATCCACTACGCCACGCCGCTGGGTCATCCGGAACTGCGCAAGCAG
GTGCTGACGCGCGTGCGGCAGGTCGGCATCCAGGCCGAGTTGTCTCAGATCCTGATCACGACGGGCGCAAGCCAGGCGCT
CGACCTCGTGGCGCGCCACCTGCTCAAGCCCGGCGATACCGTGTTCGTGGAAGACCCCGGCTACTACAACCTGTTCGGCT
TGCTGCGCATGCAGGGCGTGCAGCTCGTGGGCGTGCCGCACACGCCGAACGGGCCTGACCCCGAGGCCTGCGAGCACCTG
CTGCGTGATCACAAGCCGAAGCTGTTCTTCACGAACAGCGTGCTGCAGAACCCCACCGGCTCGACGCTGGCGCCACCGGT
GGCATTCCGGCTGCTCGAACTGGCGCGCAAGCACAACTTCCGTTTCGTGGAAGACGACATCTTCTCGGACTTCCAGCTCA
ACTTCACCGACCGGCTGGCCACGCTCGACCAGCTCGAGCACGTGATCTACGTTGGCGGGTTTTCGAAGACGGTGTCGGCG
GCGCTGCGCGTGGGCTACATCGTCGCAGACAAGGCGCTGGTCAAGGATCTGATCGACGTGAAGGTGCTGACGAGCGTGGC
GGGCTCCCATTTCGCCGAAGCCGTCACCGCGACGATGCTGGAGCGCGGCAACTACCGCAAATACGTGGAGCGGCTGCGCG
TACGCACGCGCGAAGTCACGGCCGATGTGGTCAAGCTTCTGGGTCAGTACAACTGGGACGTGTTCTGCGAGCCGGCAGGC
GGCAATTTCCTGTGGGCGCGTCCGCGCGGCATCGAGGACTCGCGCGAACTCGTCGCGCTGGCCGAAAACCACGGCGTGGC
GCTGGCGCCGGGACACTTCTTTCGCCCCGGCGGCGAGACCACGGCGTGGGTGCGCATCAACTCGGCCTACGCGAGCGATC
CCCGCGCACGCGCGTTCCTCGAGGACGCCGGCAGCCGCTGA

Upstream 100 bases:

>100_bases
CCATTATTCATGGCGCGGACTACAATCCCATGCACAGTTCCGAACAGTTTTCATTGAACTGTTCAGTAGTTTTTGCTGAC
AGTTGCCGCTGCCGCCTCCT

Downstream 100 bases:

>100_bases
TCAGCCCTCGGCGTCGCCGCCGTGGTTGTGCAGCACCGCGTTGCGGCGCGAGTAAGCGAAGTAAATGATCAGACCCAGCC
CGATCCAGCACAGGAATGCA

Product: GntR family transcriptional regulator, HTH:Aminotransferase, class I and II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MRLLLDPSTGVPLTEQIVLGVKAWISSREALPGARLPSIRQMAAEHGISRFPVIEAYDRLVSQGLVDSRQGSGFYVADST
LAGRSGRGWSDPSLAEDLSLHIIDQFHHPSGTLKLAGGFVPEEWRDVEGLTQAIRHITRHDIDSVIHYATPLGHPELRKQ
VLTRVRQVGIQAELSQILITTGASQALDLVARHLLKPGDTVFVEDPGYYNLFGLLRMQGVQLVGVPHTPNGPDPEACEHL
LRDHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELARKHNFRFVEDDIFSDFQLNFTDRLATLDQLEHVIYVGGFSKTVSA
ALRVGYIVADKALVKDLIDVKVLTSVAGSHFAEAVTATMLERGNYRKYVERLRVRTREVTADVVKLLGQYNWDVFCEPAG
GNFLWARPRGIEDSRELVALAENHGVALAPGHFFRPGGETTAWVRINSAYASDPRARAFLEDAGSR

Sequences:

>Translated_466_residues
MRLLLDPSTGVPLTEQIVLGVKAWISSREALPGARLPSIRQMAAEHGISRFPVIEAYDRLVSQGLVDSRQGSGFYVADST
LAGRSGRGWSDPSLAEDLSLHIIDQFHHPSGTLKLAGGFVPEEWRDVEGLTQAIRHITRHDIDSVIHYATPLGHPELRKQ
VLTRVRQVGIQAELSQILITTGASQALDLVARHLLKPGDTVFVEDPGYYNLFGLLRMQGVQLVGVPHTPNGPDPEACEHL
LRDHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELARKHNFRFVEDDIFSDFQLNFTDRLATLDQLEHVIYVGGFSKTVSA
ALRVGYIVADKALVKDLIDVKVLTSVAGSHFAEAVTATMLERGNYRKYVERLRVRTREVTADVVKLLGQYNWDVFCEPAG
GNFLWARPRGIEDSRELVALAENHGVALAPGHFFRPGGETTAWVRINSAYASDPRARAFLEDAGSR
>Mature_466_residues
MRLLLDPSTGVPLTEQIVLGVKAWISSREALPGARLPSIRQMAAEHGISRFPVIEAYDRLVSQGLVDSRQGSGFYVADST
LAGRSGRGWSDPSLAEDLSLHIIDQFHHPSGTLKLAGGFVPEEWRDVEGLTQAIRHITRHDIDSVIHYATPLGHPELRKQ
VLTRVRQVGIQAELSQILITTGASQALDLVARHLLKPGDTVFVEDPGYYNLFGLLRMQGVQLVGVPHTPNGPDPEACEHL
LRDHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELARKHNFRFVEDDIFSDFQLNFTDRLATLDQLEHVIYVGGFSKTVSA
ALRVGYIVADKALVKDLIDVKVLTSVAGSHFAEAVTATMLERGNYRKYVERLRVRTREVTADVVKLLGQYNWDVFCEPAG
GNFLWARPRGIEDSRELVALAENHGVALAPGHFFRPGGETTAWVRINSAYASDPRARAFLEDAGSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=300, Percent_Identity=27, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI33469970, Length=300, Percent_Identity=27, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=26.7515923566879, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1790797, Length=449, Percent_Identity=24.9443207126949, Blast_Score=130, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6321236, Length=369, Percent_Identity=23.5772357723577, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21356535, Length=346, Percent_Identity=23.9884393063584, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51527; Mature: 51527

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLDPSTGVPLTEQIVLGVKAWISSREALPGARLPSIRQMAAEHGISRFPVIEAYDRL
CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
VSQGLVDSRQGSGFYVADSTLAGRSGRGWSDPSLAEDLSLHIIDQFHHPSGTLKLAGGFV
HHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCC
PEEWRDVEGLTQAIRHITRHDIDSVIHYATPLGHPELRKQVLTRVRQVGIQAELSQILIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHC
TGASQALDLVARHLLKPGDTVFVEDPGYYNLFGLLRMQGVQLVGVPHTPNGPDPEACEHL
CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH
LRDHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELARKHNFRFVEDDIFSDFQLNFTDRLA
HHCCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECHHCCCCCEECHHHHHH
TLDQLEHVIYVGGFSKTVSAALRVGYIVADKALVKDLIDVKVLTSVAGSHFAEAVTATML
HHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGNYRKYVERLRVRTREVTADVVKLLGQYNWDVFCEPAGGNFLWARPRGIEDSRELVAL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCHHHHEEE
AENHGVALAPGHFFRPGGETTAWVRINSAYASDPRARAFLEDAGSR
CCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MRLLLDPSTGVPLTEQIVLGVKAWISSREALPGARLPSIRQMAAEHGISRFPVIEAYDRL
CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
VSQGLVDSRQGSGFYVADSTLAGRSGRGWSDPSLAEDLSLHIIDQFHHPSGTLKLAGGFV
HHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCC
PEEWRDVEGLTQAIRHITRHDIDSVIHYATPLGHPELRKQVLTRVRQVGIQAELSQILIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHC
TGASQALDLVARHLLKPGDTVFVEDPGYYNLFGLLRMQGVQLVGVPHTPNGPDPEACEHL
CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHH
LRDHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELARKHNFRFVEDDIFSDFQLNFTDRLA
HHCCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEECHHCCCCCEECHHHHHH
TLDQLEHVIYVGGFSKTVSAALRVGYIVADKALVKDLIDVKVLTSVAGSHFAEAVTATML
HHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGNYRKYVERLRVRTREVTADVVKLLGQYNWDVFCEPAGGNFLWARPRGIEDSRELVAL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCHHHHEEE
AENHGVALAPGHFFRPGGETTAWVRINSAYASDPRARAFLEDAGSR
CCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]