Click here to switch to the map view.

The map label for this gene is ybjT [C]

Identifier: 94309122

GI number: 94309122

Start: 184449

End: 185471

Strand: Direct

Name: ybjT [C]

Synonym: Rmet_0177

Alternate gene names: 94309122

Gene position: 184449-185471 (Clockwise)

Preceding gene: 94309121

Following gene: 94309123

Centisome position: 4.7

GC content: 66.96

Gene sequence:

>1023_bases
ATGCAGACCAGCAATGTTCTTGTCATCGGGGGCGCCGGTTTTATCGGCAGCCACCTGATTTCCCGCCTTGCCGGCGCAGC
CACCGCCTCTGGCGCGCCGCTCGATCCGGCTTCCCATCCCGATAGTCCCATCGCGCCCGAACGCATTATCGTCGGCACGC
GCAATGTCGAGCACGCCCAGCACCTGCTGCTGCTGCCGCGCGTCGAAGTGATCGAGCTTGGCCTGGCCGACGACGCAGTG
CTCGACGACGCCATCGGCTCGCTTGGCGTCGACGGTATCGTCGTCAATCTGGTCGGCGTCCTGCATGGCGAGCGTGGCGA
CCCGTATGGGCCGCAGTTCGCCGCCGCGCATGTCGATCTGCCGCGCCAGGTCGTCGAGTCCTGCAAGCGCACTGGCGTTC
GCAGGCTGCTTCATATGAGCGCGCTCGGCGCCGATCCACAAGGACCGTCGATGTATCTGCGCAGCAAGGGCGATGGCGGG
CGGATCGTGCGCGAAAGCGGGCTCGACTGGACGATCTTCCGTCCGTCTGTCGTATTCGGTCCCGACGACCATTTCCTGAA
CCTGTTCGCCCAGTTGCAGCAGATGGCGCCGGTGGTGCCGCTGGCGTGCGCCCATGCGCGGTTCCAGCCGGTGTTCGTGC
TGGACGTGGTGCAGGCCTTCGTCAATGCGATGGTCCATCCCGAAACGATCGGGCAGGTCTACGAGCTTGGCGGTCCGCAG
GTCTACACGCTCGAGGAACTCGTCCGCTTTGCCGGCCGCGCGTCGGGGCATCCCCGTCCCGTCATCGCGCTACCCGACGC
GCTCGCGCGGATGCAGGCGGCCGTGCTCGAACACGTGCCCGGTGGCACGGTGCTGTCGCGCGACAATCTCGACTCGATGC
GGCTGGACAACGTGCTGGCGCACCCGATGGCGGCCGAGCTTGGCGTGCGCCCGGTCAGCCTGGAAGTCGTGATGACCGAC
GTGCTGTCAGGCCGCAACCGCGACAGCGCGCTGCAGTTCATGCGGGGCAGCGTGCATCGATGA

Upstream 100 bases:

>100_bases
GCCTGACGAGGCACTCTCGCACTCAGACGGAGGCGGTGGGCCCCGTGGCCACGGACGCGCGCATCGATGCCTGCGTAACG
TGTTCGTCACGGAGCCCACC

Downstream 100 bases:

>100_bases
CCGGGGCTCGCTCCTGATCGATGTGATTGTGGCTCACACGCTTGCGAGCGTAATTCGCTTGGAACGCGCCCCGCGAGGTC
GATAGAATGACCGGTTCGGG

Product: putative NAD-dependent epimerase/dehydratase

Products: NAD+; ubiquinol

Alternate protein names: NADH Dehydrogenase; NADH-Ubiquinone Oxidoreductase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase; NADH-Ubiquinone Oxidoreductase Subunit; Oxidoreductase Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Dtdp-Glucose-46-Dehydratase; NADH-Ubiquinone Oxireductase; NADH Dehydrogenase/Oxidoreductase-Like Protein; NADH-Ubiquinone Oxidoreductase Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase Family; NAD Dependent Epimerase/Dehydratase Family Protein; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH Ubiquinone Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerases; NADH Dehydrogenase 1 Alpha Subcomplex; Dehydrogenase; NmrA-Like Protein; NADH Dehydrogenase/NADH Dehydrogenase Protein; Ubiquinone Dependent NADH Dehydrogenase; DTDP-4-Dehydrorhamnose Reductase; NADH Dehydrogenase Subunit; Homolog NADH Dehydrogenase; Methyltransferase FkbM; NmrA Family Protein; NADH Dehydrogenase-Like Protein; NAD Dependent Epimerase; Nucleoside-Diphosphate Sugar Epimerase; NADH-Ubiquinone Oxidoreductase -Like Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase Protein; LOW QUALITY PROTEIN Oxidoreductase

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MQTSNVLVIGGAGFIGSHLISRLAGAATASGAPLDPASHPDSPIAPERIIVGTRNVEHAQHLLLLPRVEVIELGLADDAV
LDDAIGSLGVDGIVVNLVGVLHGERGDPYGPQFAAAHVDLPRQVVESCKRTGVRRLLHMSALGADPQGPSMYLRSKGDGG
RIVRESGLDWTIFRPSVVFGPDDHFLNLFAQLQQMAPVVPLACAHARFQPVFVLDVVQAFVNAMVHPETIGQVYELGGPQ
VYTLEELVRFAGRASGHPRPVIALPDALARMQAAVLEHVPGGTVLSRDNLDSMRLDNVLAHPMAAELGVRPVSLEVVMTD
VLSGRNRDSALQFMRGSVHR

Sequences:

>Translated_340_residues
MQTSNVLVIGGAGFIGSHLISRLAGAATASGAPLDPASHPDSPIAPERIIVGTRNVEHAQHLLLLPRVEVIELGLADDAV
LDDAIGSLGVDGIVVNLVGVLHGERGDPYGPQFAAAHVDLPRQVVESCKRTGVRRLLHMSALGADPQGPSMYLRSKGDGG
RIVRESGLDWTIFRPSVVFGPDDHFLNLFAQLQQMAPVVPLACAHARFQPVFVLDVVQAFVNAMVHPETIGQVYELGGPQ
VYTLEELVRFAGRASGHPRPVIALPDALARMQAAVLEHVPGGTVLSRDNLDSMRLDNVLAHPMAAELGVRPVSLEVVMTD
VLSGRNRDSALQFMRGSVHR
>Mature_340_residues
MQTSNVLVIGGAGFIGSHLISRLAGAATASGAPLDPASHPDSPIAPERIIVGTRNVEHAQHLLLLPRVEVIELGLADDAV
LDDAIGSLGVDGIVVNLVGVLHGERGDPYGPQFAAAHVDLPRQVVESCKRTGVRRLLHMSALGADPQGPSMYLRSKGDGG
RIVRESGLDWTIFRPSVVFGPDDHFLNLFAQLQQMAPVVPLACAHARFQPVFVLDVVQAFVNAMVHPETIGQVYELGGPQ
VYTLEELVRFAGRASGHPRPVIALPDALARMQAAVLEHVPGGTVLSRDNLDSMRLDNVLAHPMAAELGVRPVSLEVVMTD
VLSGRNRDSALQFMRGSVHR

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=235, Percent_Identity=31.063829787234, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17556106, Length=260, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24667554, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 36308; Mature: 36308

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSNVLVIGGAGFIGSHLISRLAGAATASGAPLDPASHPDSPIAPERIIVGTRNVEHAQ
CCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
HLLLLPRVEVIELGLADDAVLDDAIGSLGVDGIVVNLVGVLHGERGDPYGPQFAAAHVDL
HHHHCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
PRQVVESCKRTGVRRLLHMSALGADPQGPSMYLRSKGDGGRIVRESGLDWTIFRPSVVFG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCEEEEECCEEEEC
PDDHFLNLFAQLQQMAPVVPLACAHARFQPVFVLDVVQAFVNAMVHPETIGQVYELGGPQ
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
VYTLEELVRFAGRASGHPRPVIALPDALARMQAAVLEHVPGGTVLSRDNLDSMRLDNVLA
EEEHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
HPMAAELGVRPVSLEVVMTDVLSGRNRDSALQFMRGSVHR
CCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MQTSNVLVIGGAGFIGSHLISRLAGAATASGAPLDPASHPDSPIAPERIIVGTRNVEHAQ
CCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
HLLLLPRVEVIELGLADDAVLDDAIGSLGVDGIVVNLVGVLHGERGDPYGPQFAAAHVDL
HHHHCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
PRQVVESCKRTGVRRLLHMSALGADPQGPSMYLRSKGDGGRIVRESGLDWTIFRPSVVFG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCEEEEECCEEEEC
PDDHFLNLFAQLQQMAPVVPLACAHARFQPVFVLDVVQAFVNAMVHPETIGQVYELGGPQ
CCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
VYTLEELVRFAGRASGHPRPVIALPDALARMQAAVLEHVPGGTVLSRDNLDSMRLDNVLA
EEEHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
HPMAAELGVRPVSLEVVMTDVLSGRNRDSALQFMRGSVHR
CCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA