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The map label for this gene is sodB [H]

Identifier: 93007055

GI number: 93007055

Start: 2738351

End: 2738980

Strand: Reverse

Name: sodB [H]

Synonym: Pcryo_2231

Alternate gene names: 93007055

Gene position: 2738980-2738351 (Counterclockwise)

Preceding gene: 93007061

Following gene: 93007051

Centisome position: 89.51

GC content: 44.13

Gene sequence:

>630_bases
ATGTCAAAGATTACTTTACCAGACCTACCATATGCAAAAGATGCTTTAGAGCCGCACATCAGTGCTGAAACTTTAGAGTT
CCATCATGATAAGCATCACAATGCATACGTGACTAAGCTTAACGAGTTGCTACCAGGTTCTGGTCTAGAAGACAAAACGT
TGTCAGAAATCATCATAGCAACGGCTAAAGATGACAGCAAGCAAGGTATGTTTAACCAAGCAGCCCAAGTATGGAACCAC
ACGTTCTATTGGAACTGCATGACGCCAACAAACGGCGGCGGCGAACCTACTGGTGACTTGAAAGCGAAAATCGAAGAAGA
TTTCGGTAGCTATGACAAGTTCCGTGAAGAGTTCAAAAACGCAGCATTGACTCAGTTTGGTTCAGGTTGGGCATGGTTAG
TGGCTGATAAAGTCGGTGGCAAATTGTCTATCGCCAAAACTGCTAACGCTGACACGCCACTTGCACATGACCAAATCGCG
GTATTGACTTGTGATGTATGGGAACATGCTTACTACATCGATTATCGTAACCGTCGTCCTGATTACGTCGATACGTTCCT
AGACAAACTAGTGAACTGGGACTACGCAAATGCGAAATATAAAGGTCAAGATGCTGGTGTTGAAGAGTAA

Upstream 100 bases:

>100_bases
CAATTTAGCCAGCTATTTTATAGGGTTTTTTGCGTGTTAAAAATAGCGTAAAATTCAGTTTCCATAAAATAACAGTTAAA
ACAGCAAGGATAAAATAACT

Downstream 100 bases:

>100_bases
TCTTTAACGACTAAGGTTTTGATTTGAAAAAAGGACGCTGAGAGGCGTCCTTTTTTTGGTTTAATGATTATAGGAAGGTT
GTACTAATGTCGAAATGATA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSKITLPDLPYAKDALEPHISAETLEFHHDKHHNAYVTKLNELLPGSGLEDKTLSEIIIATAKDDSKQGMFNQAAQVWNH
TFYWNCMTPTNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAALTQFGSGWAWLVADKVGGKLSIAKTANADTPLAHDQIA
VLTCDVWEHAYYIDYRNRRPDYVDTFLDKLVNWDYANAKYKGQDAGVEE

Sequences:

>Translated_209_residues
MSKITLPDLPYAKDALEPHISAETLEFHHDKHHNAYVTKLNELLPGSGLEDKTLSEIIIATAKDDSKQGMFNQAAQVWNH
TFYWNCMTPTNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAALTQFGSGWAWLVADKVGGKLSIAKTANADTPLAHDQIA
VLTCDVWEHAYYIDYRNRRPDYVDTFLDKLVNWDYANAKYKGQDAGVEE
>Mature_208_residues
SKITLPDLPYAKDALEPHISAETLEFHHDKHHNAYVTKLNELLPGSGLEDKTLSEIIIATAKDDSKQGMFNQAAQVWNHT
FYWNCMTPTNGGGEPTGDLKAKIEEDFGSYDKFREEFKNAALTQFGSGWAWLVADKVGGKLSIAKTANADTPLAHDQIAV
LTCDVWEHAYYIDYRNRRPDYVDTFLDKLVNWDYANAKYKGQDAGVEE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=207, Percent_Identity=42.0289855072464, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI67782305, Length=207, Percent_Identity=42.0289855072464, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=36.81592039801, Blast_Score=117, Evalue=9e-27,
Organism=Escherichia coli, GI1787946, Length=190, Percent_Identity=57.8947368421053, Blast_Score=228, Evalue=2e-61,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=44.2857142857143, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=208, Percent_Identity=36.5384615384615, Blast_Score=127, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=210, Percent_Identity=38.0952380952381, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=36.0189573459716, Blast_Score=115, Evalue=5e-27,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=38.7254901960784, Blast_Score=130, Evalue=5e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23549; Mature: 23418

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKITLPDLPYAKDALEPHISAETLEFHHDKHHNAYVTKLNELLPGSGLEDKTLSEIIIA
CCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEE
TAKDDSKQGMFNQAAQVWNHTFYWNCMTPTNGGGEPTGDLKAKIEEDFGSYDKFREEFKN
ECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AALTQFGSGWAWLVADKVGGKLSIAKTANADTPLAHDQIAVLTCDVWEHAYYIDYRNRRP
HHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
DYVDTFLDKLVNWDYANAKYKGQDAGVEE
CHHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
SKITLPDLPYAKDALEPHISAETLEFHHDKHHNAYVTKLNELLPGSGLEDKTLSEIIIA
CCCCCCCCCCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEE
TAKDDSKQGMFNQAAQVWNHTFYWNCMTPTNGGGEPTGDLKAKIEEDFGSYDKFREEFKN
ECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AALTQFGSGWAWLVADKVGGKLSIAKTANADTPLAHDQIAVLTCDVWEHAYYIDYRNRRP
HHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC
DYVDTFLDKLVNWDYANAKYKGQDAGVEE
CHHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9086394 [H]