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The map label for this gene is psd [H]

Identifier: 93007042

GI number: 93007042

Start: 2722522

End: 2723355

Strand: Direct

Name: psd [H]

Synonym: Pcryo_2218

Alternate gene names: 93007042

Gene position: 2722522-2723355 (Clockwise)

Preceding gene: 93007038

Following gene: 93007043

Centisome position: 88.97

GC content: 45.68

Gene sequence:

>834_bases
ATGAATGTATTTACTACCTTACAGCAATTTGTCCCGCAGCAAAAAATCAGTAAAGTCGCAGGGCGCTTAGCTGCCAGCCG
CCACCCTTGGGTTAAGCGTACGTTTATCCGCAGTTTTGCCAAAGCGTATGATGTTAGCTTAGATGAATATGAGCGTCAAA
GCCTAAACGCTTATGAGAGCTTTAATGATTTCTTTACTCGTGAGCTCCAAGACAATGCCCGTATTATCGATGCCAGTATC
AATGGTATTGTCAGTCCTGCGGATGGCATGATTTCGCAGCTTGGGCAGATTCATGACCATAAGCTACTGCAAGCCAAAGG
TCGTGACTATGATATCGGTCAGCTCTTAGCTGATAGCGCAGATGGCGATTATTTTGCGGATGGTAGTTTTGCTACGGTCT
ATCTTGCTCCAAGCAACTATCACCGTGTGCATATGCCATTTGACGGTATATTAACCAAGACCCGCTATGTACCTGGTACA
CTATTTTCGGTCAATAACACCACGGCTGCTAATGTGCCGGATTTGTTTGCTCGTAACGAGCGCCTTGTCTGTCTGTTTGA
TACCGCCTATGGTAAAGCGGCAGTAGTGATGGTCGGTGCGATGATTGTCGCTGGGATTGAGACAGTAGCGACGGGTAAAA
TTAGCCGTACCGATGATATTCAAGAAGCAGACCATGATATGAGCTTTAAAAAAGGTGACGAGCTTGGTCGTTTTTATTTA
GGTTCAACCGCAATTGTAGTACTGCCAAAAGCAGCAAAAACGGATTGGCAAGATACCATGCAGCATGGCTCAATCGTTCA
AATGGGGCAACTGTTGGGTAGCGCTAAAACCTAA

Upstream 100 bases:

>100_bases
GTTTATAAATAAATCTAGCTATAAAACTGCCTATCTATGATTTTTTATTACAACTTCTTATTTTAATAACTATTTTTAAT
CCCTAATTTGGTCATCTATT

Downstream 100 bases:

>100_bases
TACCATTTATCTAAGTAAAAAACTTGTGTAATAAGTAATATTGAAAAAAAAATGAGCATAGACAGTAATCAGAATACTGC
CTATGCTTTTTTTGTGCCCA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNVFTTLQQFVPQQKISKVAGRLAASRHPWVKRTFIRSFAKAYDVSLDEYERQSLNAYESFNDFFTRELQDNARIIDASI
NGIVSPADGMISQLGQIHDHKLLQAKGRDYDIGQLLADSADGDYFADGSFATVYLAPSNYHRVHMPFDGILTKTRYVPGT
LFSVNNTTAANVPDLFARNERLVCLFDTAYGKAAVVMVGAMIVAGIETVATGKISRTDDIQEADHDMSFKKGDELGRFYL
GSTAIVVLPKAAKTDWQDTMQHGSIVQMGQLLGSAKT

Sequences:

>Translated_277_residues
MNVFTTLQQFVPQQKISKVAGRLAASRHPWVKRTFIRSFAKAYDVSLDEYERQSLNAYESFNDFFTRELQDNARIIDASI
NGIVSPADGMISQLGQIHDHKLLQAKGRDYDIGQLLADSADGDYFADGSFATVYLAPSNYHRVHMPFDGILTKTRYVPGT
LFSVNNTTAANVPDLFARNERLVCLFDTAYGKAAVVMVGAMIVAGIETVATGKISRTDDIQEADHDMSFKKGDELGRFYL
GSTAIVVLPKAAKTDWQDTMQHGSIVQMGQLLGSAKT
>Mature_277_residues
MNVFTTLQQFVPQQKISKVAGRLAASRHPWVKRTFIRSFAKAYDVSLDEYERQSLNAYESFNDFFTRELQDNARIIDASI
NGIVSPADGMISQLGQIHDHKLLQAKGRDYDIGQLLADSADGDYFADGSFATVYLAPSNYHRVHMPFDGILTKTRYVPGT
LFSVNNTTAANVPDLFARNERLVCLFDTAYGKAAVVMVGAMIVAGIETVATGKISRTDDIQEADHDMSFKKGDELGRFYL
GSTAIVVLPKAAKTDWQDTMQHGSIVQMGQLLGSAKT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=303, Percent_Identity=28.0528052805281, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=44.3661971830986, Blast_Score=236, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI71980843, Length=273, Percent_Identity=32.2344322344322, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI71980840, Length=273, Percent_Identity=32.2344322344322, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6324160, Length=363, Percent_Identity=26.4462809917355, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6321609, Length=219, Percent_Identity=30.1369863013699, Blast_Score=98, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24649526, Length=304, Percent_Identity=30.2631578947368, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24649528, Length=304, Percent_Identity=30.2631578947368, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24649524, Length=304, Percent_Identity=30.2631578947368, Blast_Score=110, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30603; Mature: 30603

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFTTLQQFVPQQKISKVAGRLAASRHPWVKRTFIRSFAKAYDVSLDEYERQSLNAYES
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FNDFFTRELQDNARIIDASINGIVSPADGMISQLGQIHDHKLLQAKGRDYDIGQLLADSA
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
DGDYFADGSFATVYLAPSNYHRVHMPFDGILTKTRYVPGTLFSVNNTTAANVPDLFARNE
CCCEEECCCEEEEEECCCCCCEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCC
RLVCLFDTAYGKAAVVMVGAMIVAGIETVATGKISRTDDIQEADHDMSFKKGDELGRFYL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHCCEEE
GSTAIVVLPKAAKTDWQDTMQHGSIVQMGQLLGSAKT
CCEEEEEECCCCCCCHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNVFTTLQQFVPQQKISKVAGRLAASRHPWVKRTFIRSFAKAYDVSLDEYERQSLNAYES
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FNDFFTRELQDNARIIDASINGIVSPADGMISQLGQIHDHKLLQAKGRDYDIGQLLADSA
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCC
DGDYFADGSFATVYLAPSNYHRVHMPFDGILTKTRYVPGTLFSVNNTTAANVPDLFARNE
CCCEEECCCEEEEEECCCCCCEEECCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCC
RLVCLFDTAYGKAAVVMVGAMIVAGIETVATGKISRTDDIQEADHDMSFKKGDELGRFYL
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHCCEEE
GSTAIVVLPKAAKTDWQDTMQHGSIVQMGQLLGSAKT
CCEEEEEECCCCCCCHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA