| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is xcpQ [H]
Identifier: 93006778
GI number: 93006778
Start: 2411470
End: 2413722
Strand: Reverse
Name: xcpQ [H]
Synonym: Pcryo_1954
Alternate gene names: 93006778
Gene position: 2413722-2411470 (Counterclockwise)
Preceding gene: 93006779
Following gene: 93006777
Centisome position: 78.88
GC content: 47.71
Gene sequence:
>2253_bases ATGGTCAGTTCTCATAATTTTTCAGTCACACCTTTGCATCATATTTTGCAGCGTTTGATGCGATTGTGCCGTCCTCTTTG CTTGGCCATACCACTATGGGCGGCTAGTACTGGGCTGGTGAGTGCTGAAAGCTGGAAAGTCAATTTGCAAGATGCTGATA TCAAAGCCTTTATCAATGAAGTGGCGACGATTACCAATCAAAACTTCGTCCTTGATCCGCGCATCAACGGTAATGTGACT GTGATCTCCAACAAGCCTTTGTCGCGTGATGAGATTTATCAGCTGTTTTTGAGCGTGATGCAAGTCAACGGTATCGCTGC TATCGATTCAGGTACAACGATTAAACTGGTGCCAGATAACGTCGCCAAACAAACCGGTGTTGCTGTTGATTTACGTGGTG AGAGCGTCGGTGAAACCTTGGCAACGCGGGTGATTTATCTGACGAATACTCAAGCAGCAGAAGTCTTGGGCGTTATCCGT CCGCTCATGCCACCGTCTGCACATGCCGCTGCTGTGCCTGGAGTCAATGCCTTAGTGCTGTCCGATCGTGCTGATAGCCT AAATCAGCTGACAGCGCTTATCCGTGATTTAGACAGTAATGTGAATGACAGCTTACAAGTCATACCACTACGTCATGTCG ATGCCGAACGTATGATGGAGTTGATTAGCGCACTGGTGGCGAGTGCTGGTAGCGGCCAGGCAACTGGCAACAATCAGCTA AAGGTTATCGCCGACACGGCGAGCGACAGACTGTTGGTTAAAGGCAGTCCTGAGATGATTGCCAAGGTTCAAGAGATGGT CAATCAATTGGACACAACGCCATCAAGGCGCTTAAGTGGTCTGCGTGTTTTCCGCCTAAAATATGCCAGTGCCGGTCATA TTGCTGAGATGCTGCGCGGTCTCCTTGCCAGCCAATCAATCAATAGCTCTGGTGGTTCTTCAACATTAGAGTCAGCATCA TTGAATGATGCCGCTGCTACAGGGTCGTCGCTAACTGGTGGTGCTAATAGTAAGGTAGGTAGCAATAGTATCGGTGGTAC TGCTGCTACGCCTTTACCGAATAATAGTTCCGCGGGTACAAGTATCGGTATCGGTGGTCGACCTTTTAGTATTATCGCTG ATGAAACTCAAAACGCCGTCATTGTTAATGCAGCACCTGAGCTGATGTTTGAGATCGAAGACGCTGTCAATCAGTTAGAC AGCCGCCGCTCGCAAGTATTGATTCAAGCAGCTATTGTTGAAGTGTCGGGCGATGATGCAACGCAGCTTGGGGTTCAGTG GGCGCTAGGTAATGCCAATAGCGGTTATGGCGTGGTGAACTTCAATAATGTGGGCGCAAGTGCAGTTTCACTTGCCGCTG CTGCTTTGTCAGGTGGTACAGGGATAAGCGCAGCAGCAGGCTCCATTGCTGGTGCTTTGTTAGGTATTGGCAGTAGTAGT AAAGACAGCAAAGGCAATGCGCAGTTCTATGGTGCTATCTTGCAAGCGCTTGATTCTTCTACCAGCGCCAATCTGCTATC TATGCCATCGATTTTGACCTTGGACAATGAAAAAGCCAGTATCTTAGTGGGTCAGAACGTGCCGTTTGTGACAGGCTCCT ACACGACGGGTAGTGACTCTTCGACGAACCCCTTTCAAACGATTGATCGCCAAGATATTGGTATCAATCTAAACGTCATC CCGCATATTGGTGCAAACGGCACCGTACGTTTAGAGGTATCACAGGAAGTCTCTTCAGTCGTACCGGGTAGTGCTGGGAA TGCTAGCGGTCTTATCACCAATAAAAGCCTGATCAATACCACCATTTTGGCAGACGATCAGCAGACCATTGCCTTAGGTG GCTTGATGCGCGACAACTCCACTACGCGCCAACAAAAAGTGCCAGGTTTGGGTAATGTACCCCTTATCGGTCGACTGTTC CGTTCGGACAATGACAATAGCCAAAAAAGCAATTTAATCATATTTTTACAGCCGACTATCCTCCGTGATGGCGGTGCAGT AGCAAGCGTGACAGAGCGTAAATACAATCAGATGCGCGTTCTTCAGCTGGTTATCGATAAAAACGGTACGATTAAACAGC TGCCATTAAGCGGTACCGAAGGTTGGAATGGTGATATTATTGCTGATTATGAGCTTATGCCACTCAATCCTTTGATTCCT AAACGGGATCAAAAGCCAAAAACAACTTCCAAAGGTTTTACTCGTGTTGATAGTCCAAGCACAGGTATCACAACTTATCC CTTAAATCGTTAA
Upstream 100 bases:
>100_bases ATCAATTAAAATTATGACTTATCAAATCCAGTAACCATTATATTCAACATACGTTGAATTCAGTACATACCAAGCGCCAT CACTGTAGGTAATCATCAAT
Downstream 100 bases:
>100_bases GCGCTTTTATGGTTGTTTGCTAATAGATTATCTAAGATTTTAGCGCTTACCAAACTCTACTTTCATATCTCTCTCAAAGT TTTACTATACTTAAAAGTAC
Product: type II and III secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MVSSHNFSVTPLHHILQRLMRLCRPLCLAIPLWAASTGLVSAESWKVNLQDADIKAFINEVATITNQNFVLDPRINGNVT VISNKPLSRDEIYQLFLSVMQVNGIAAIDSGTTIKLVPDNVAKQTGVAVDLRGESVGETLATRVIYLTNTQAAEVLGVIR PLMPPSAHAAAVPGVNALVLSDRADSLNQLTALIRDLDSNVNDSLQVIPLRHVDAERMMELISALVASAGSGQATGNNQL KVIADTASDRLLVKGSPEMIAKVQEMVNQLDTTPSRRLSGLRVFRLKYASAGHIAEMLRGLLASQSINSSGGSSTLESAS LNDAAATGSSLTGGANSKVGSNSIGGTAATPLPNNSSAGTSIGIGGRPFSIIADETQNAVIVNAAPELMFEIEDAVNQLD SRRSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSLAAAALSGGTGISAAAGSIAGALLGIGSSS KDSKGNAQFYGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVI PHIGANGTVRLEVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLGNVPLIGRLF RSDNDNSQKSNLIIFLQPTILRDGGAVASVTERKYNQMRVLQLVIDKNGTIKQLPLSGTEGWNGDIIADYELMPLNPLIP KRDQKPKTTSKGFTRVDSPSTGITTYPLNR
Sequences:
>Translated_750_residues MVSSHNFSVTPLHHILQRLMRLCRPLCLAIPLWAASTGLVSAESWKVNLQDADIKAFINEVATITNQNFVLDPRINGNVT VISNKPLSRDEIYQLFLSVMQVNGIAAIDSGTTIKLVPDNVAKQTGVAVDLRGESVGETLATRVIYLTNTQAAEVLGVIR PLMPPSAHAAAVPGVNALVLSDRADSLNQLTALIRDLDSNVNDSLQVIPLRHVDAERMMELISALVASAGSGQATGNNQL KVIADTASDRLLVKGSPEMIAKVQEMVNQLDTTPSRRLSGLRVFRLKYASAGHIAEMLRGLLASQSINSSGGSSTLESAS LNDAAATGSSLTGGANSKVGSNSIGGTAATPLPNNSSAGTSIGIGGRPFSIIADETQNAVIVNAAPELMFEIEDAVNQLD SRRSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSLAAAALSGGTGISAAAGSIAGALLGIGSSS KDSKGNAQFYGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVI PHIGANGTVRLEVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLGNVPLIGRLF RSDNDNSQKSNLIIFLQPTILRDGGAVASVTERKYNQMRVLQLVIDKNGTIKQLPLSGTEGWNGDIIADYELMPLNPLIP KRDQKPKTTSKGFTRVDSPSTGITTYPLNR >Mature_750_residues MVSSHNFSVTPLHHILQRLMRLCRPLCLAIPLWAASTGLVSAESWKVNLQDADIKAFINEVATITNQNFVLDPRINGNVT VISNKPLSRDEIYQLFLSVMQVNGIAAIDSGTTIKLVPDNVAKQTGVAVDLRGESVGETLATRVIYLTNTQAAEVLGVIR PLMPPSAHAAAVPGVNALVLSDRADSLNQLTALIRDLDSNVNDSLQVIPLRHVDAERMMELISALVASAGSGQATGNNQL KVIADTASDRLLVKGSPEMIAKVQEMVNQLDTTPSRRLSGLRVFRLKYASAGHIAEMLRGLLASQSINSSGGSSTLESAS LNDAAATGSSLTGGANSKVGSNSIGGTAATPLPNNSSAGTSIGIGGRPFSIIADETQNAVIVNAAPELMFEIEDAVNQLD SRRSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSLAAAALSGGTGISAAAGSIAGALLGIGSSS KDSKGNAQFYGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVI PHIGANGTVRLEVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLGNVPLIGRLF RSDNDNSQKSNLIIFLQPTILRDGGAVASVTERKYNQMRVLQLVIDKNGTIKQLPLSGTEGWNGDIIADYELMPLNPLIP KRDQKPKTTSKGFTRVDSPSTGITTYPLNR
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=665, Percent_Identity=30.5263157894737, Blast_Score=273, Evalue=4e-74, Organism=Escherichia coli, GI1789793, Length=295, Percent_Identity=26.1016949152542, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 78511; Mature: 78511
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSSHNFSVTPLHHILQRLMRLCRPLCLAIPLWAASTGLVSAESWKVNLQDADIKAFINE CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHH VATITNQNFVLDPRINGNVTVISNKPLSRDEIYQLFLSVMQVNGIAAIDSGTTIKLVPDN HHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEECCCC VAKQTGVAVDLRGESVGETLATRVIYLTNTQAAEVLGVIRPLMPPSAHAAAVPGVNALVL HHHHCCCEEEECCCHHHHHHHEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE SDRADSLNQLTALIRDLDSNVNDSLQVIPLRHVDAERMMELISALVASAGSGQATGNNQL ECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCE KVIADTASDRLLVKGSPEMIAKVQEMVNQLDTTPSRRLSGLRVFRLKYASAGHIAEMLRG EEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCHHHHHHHHH LLASQSINSSGGSSTLESASLNDAAATGSSLTGGANSKVGSNSIGGTAATPLPNNSSAGT HHHHCCCCCCCCCCCHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SIGIGGRPFSIIADETQNAVIVNAAPELMFEIEDAVNQLDSRRSQVLIQAAIVEVSGDDA EECCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCC TQLGVQWALGNANSGYGVVNFNNVGASAVSLAAAALSGGTGISAAAGSIAGALLGIGSSS CEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCC KDSKGNAQFYGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDS CCCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEEECCCCEEECCCCCCCCC STNPFQTIDRQDIGINLNVIPHIGANGTVRLEVSQEVSSVVPGSAGNASGLITNKSLINT CCCCHHHCCCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCCEEECCHHEEE TILADDQQTIALGGLMRDNSTTRQQKVPGLGNVPLIGRLFRSDNDNSQKSNLIIFLQPTI EEEECCCCEEEECCEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECEE LRDGGAVASVTERKYNQMRVLQLVIDKNGTIKQLPLSGTEGWNGDIIADYELMPLNPLIP EECCCCEEHHHHHHHHHHEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCC KRDQKPKTTSKGFTRVDSPSTGITTYPLNR CCCCCCCCCCCCCEECCCCCCCEEECCCCC >Mature Secondary Structure MVSSHNFSVTPLHHILQRLMRLCRPLCLAIPLWAASTGLVSAESWKVNLQDADIKAFINE CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHH VATITNQNFVLDPRINGNVTVISNKPLSRDEIYQLFLSVMQVNGIAAIDSGTTIKLVPDN HHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEECCCC VAKQTGVAVDLRGESVGETLATRVIYLTNTQAAEVLGVIRPLMPPSAHAAAVPGVNALVL HHHHCCCEEEECCCHHHHHHHEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE SDRADSLNQLTALIRDLDSNVNDSLQVIPLRHVDAERMMELISALVASAGSGQATGNNQL ECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCE KVIADTASDRLLVKGSPEMIAKVQEMVNQLDTTPSRRLSGLRVFRLKYASAGHIAEMLRG EEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCHHHHHHHHH LLASQSINSSGGSSTLESASLNDAAATGSSLTGGANSKVGSNSIGGTAATPLPNNSSAGT HHHHCCCCCCCCCCCHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SIGIGGRPFSIIADETQNAVIVNAAPELMFEIEDAVNQLDSRRSQVLIQAAIVEVSGDDA EECCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCC TQLGVQWALGNANSGYGVVNFNNVGASAVSLAAAALSGGTGISAAAGSIAGALLGIGSSS CEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCC KDSKGNAQFYGAILQALDSSTSANLLSMPSILTLDNEKASILVGQNVPFVTGSYTTGSDS CCCCCCHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEEECCCCEEECCCCCCCCC STNPFQTIDRQDIGINLNVIPHIGANGTVRLEVSQEVSSVVPGSAGNASGLITNKSLINT CCCCHHHCCCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCCEEECCHHEEE TILADDQQTIALGGLMRDNSTTRQQKVPGLGNVPLIGRLFRSDNDNSQKSNLIIFLQPTI EEEECCCCEEEECCEECCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECEE LRDGGAVASVTERKYNQMRVLQLVIDKNGTIKQLPLSGTEGWNGDIIADYELMPLNPLIP EECCCCEEHHHHHHHHHHEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCC KRDQKPKTTSKGFTRVDSPSTGITTYPLNR CCCCCCCCCCCCCEECCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934833; 10984043 [H]